Gene : Seita.9G558400 S. italica v2.2
Defline:  (1 of 1) 2.4.2.18 - Anthranilate phosphoribosyltransferase / Phosphoribosyl-anthranilate pyrophosphorylase Genomic Order:  5584
Name:  ? Seita.9G558400 Secondary Identifier:  ? PAC:32690438
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRPSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G558400 0.5kb upstream 0.5kb upstream 5445 true scaffold_9: 57393258-57398702 Setaria italica
Seita.9G558400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57393258-57393757 Setaria italica
Seita.9G558400 0.5kb downstream 0.5kb downstream 5445 true scaffold_9: 57393758-57399202 Setaria italica
Seita.9G558400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57398703-57399202 Setaria italica
Seita.9G558400 1.0kb upstream 1.0kb upstream 5945 true scaffold_9: 57392758-57398702 Setaria italica
Seita.9G558400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57392758-57393757 Setaria italica
Seita.9G558400 1.0kb downstream 1.0kb downstream 5945 true scaffold_9: 57393758-57399702 Setaria italica
Seita.9G558400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57398703-57399702 Setaria italica
Seita.9G558400 2.0kb upstream 2.0kb upstream 6945 true scaffold_9: 57391758-57398702 Setaria italica
Seita.9G558400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57391758-57393757 Setaria italica
Seita.9G558400 2.0kb downstream 2.0kb downstream 6945 true scaffold_9: 57393758-57400702 Setaria italica
Seita.9G558400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57398703-57400702 Setaria italica
Seita.9G558400 5.0kb upstream 5.0kb upstream 9945 true scaffold_9: 57388758-57398702 Setaria italica
Seita.9G558400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57388758-57393757 Setaria italica
Seita.9G558400 5.0kb downstream 5.0kb downstream 9945 true scaffold_9: 57393758-57403702 Setaria italica
Seita.9G558400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57398703-57403702 Setaria italica
Seita.9G558400 10.0kb upstream 10.0kb upstream 14945 true scaffold_9: 57383758-57398702 Setaria italica
Seita.9G558400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57383758-57393757 Setaria italica
Seita.9G558400 10.0kb downstream 10.0kb downstream 14945 true scaffold_9: 57393758-57408702 Setaria italica
Seita.9G558400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57398703-57408702 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191216 5267 Panicoideae View MSA
124578755 5269 Grass View MSA
122046938 5273 Angiosperm View MSA
121344269 5274 Embryophyte View MSA
123424710 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.878        
cufflinks 6.867        
cufflinks 7.359        
cufflinks 7.931        
cufflinks 5.173        
cufflinks 7.059        
cufflinks 5.068       Low
cufflinks 11.924       High
cufflinks 8.413        
cufflinks 9.7        
cufflinks 7.137        
cufflinks 10.98       High
cufflinks 5.339        
cufflinks 7.743        
cufflinks 6.974        
cufflinks 3.777       Low
cufflinks 12.157       High
cufflinks 3.821       Low
cufflinks 6.361        
cufflinks 10.922       High

0 Strain