Gene : Seita.9G559000 S. italica v2.2
Defline:  (1 of 2) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  5590
Name:  ? Seita.9G559000 Secondary Identifier:  ? PAC:32693716
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7039 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G559000 0.5kb upstream 0.5kb upstream 4122 true scaffold_9: 57429564-57433685 Setaria italica
Seita.9G559000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57433186-57433685 Setaria italica
Seita.9G559000 0.5kb downstream 0.5kb downstream 4122 true scaffold_9: 57429064-57433185 Setaria italica
Seita.9G559000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57429064-57429563 Setaria italica
Seita.9G559000 1.0kb upstream 1.0kb upstream 4622 true scaffold_9: 57429564-57434185 Setaria italica
Seita.9G559000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57433186-57434185 Setaria italica
Seita.9G559000 1.0kb downstream 1.0kb downstream 4622 true scaffold_9: 57428564-57433185 Setaria italica
Seita.9G559000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57428564-57429563 Setaria italica
Seita.9G559000 2.0kb upstream 2.0kb upstream 5622 true scaffold_9: 57429564-57435185 Setaria italica
Seita.9G559000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57433186-57435185 Setaria italica
Seita.9G559000 2.0kb downstream 2.0kb downstream 5622 true scaffold_9: 57427564-57433185 Setaria italica
Seita.9G559000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57427564-57429563 Setaria italica
Seita.9G559000 5.0kb upstream 5.0kb upstream 8622 true scaffold_9: 57429564-57438185 Setaria italica
Seita.9G559000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57433186-57438185 Setaria italica
Seita.9G559000 5.0kb downstream 5.0kb downstream 8622 true scaffold_9: 57424564-57433185 Setaria italica
Seita.9G559000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57424564-57429563 Setaria italica
Seita.9G559000 10.0kb upstream 10.0kb upstream 13622 true scaffold_9: 57429564-57443185 Setaria italica
Seita.9G559000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57433186-57443185 Setaria italica
Seita.9G559000 10.0kb downstream 10.0kb downstream 13622 true scaffold_9: 57419564-57433185 Setaria italica
Seita.9G559000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57419564-57429563 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197669 5267 Panicoideae View MSA
124573457 5269 Grass View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.522        
cufflinks 8.816        
cufflinks 13.245     High High
cufflinks 16.17     High High
cufflinks 10.008        
cufflinks 10.002        
cufflinks 9.457        
cufflinks 10.324        
cufflinks 8.911        
cufflinks 6.94        
cufflinks 6.378       Low
cufflinks 6.881        
cufflinks 5.971       Low
cufflinks 11.672        
cufflinks 5.314       Low
cufflinks 9.905        
cufflinks 8.476        
cufflinks 7.347        
cufflinks 15.783     High High
cufflinks 6.288       Low

0 Strain