Gene : Seita.9G561200 S. italica v2.2
Defline:  (1 of 2) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  5612
Name:  ? Seita.9G561200 Secondary Identifier:  ? PAC:32687751
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G561200 0.5kb upstream 0.5kb upstream 5969 true scaffold_9: 57577229-57583197 Setaria italica
Seita.9G561200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57577229-57577728 Setaria italica
Seita.9G561200 0.5kb downstream 0.5kb downstream 5969 true scaffold_9: 57577729-57583697 Setaria italica
Seita.9G561200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57583198-57583697 Setaria italica
Seita.9G561200 1.0kb upstream 1.0kb upstream 6469 true scaffold_9: 57576729-57583197 Setaria italica
Seita.9G561200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57576729-57577728 Setaria italica
Seita.9G561200 1.0kb downstream 1.0kb downstream 6469 true scaffold_9: 57577729-57584197 Setaria italica
Seita.9G561200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57583198-57584197 Setaria italica
Seita.9G561200 2.0kb upstream 2.0kb upstream 7469 true scaffold_9: 57575729-57583197 Setaria italica
Seita.9G561200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57575729-57577728 Setaria italica
Seita.9G561200 2.0kb downstream 2.0kb downstream 7469 true scaffold_9: 57577729-57585197 Setaria italica
Seita.9G561200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57583198-57585197 Setaria italica
Seita.9G561200 5.0kb upstream 5.0kb upstream 10469 true scaffold_9: 57572729-57583197 Setaria italica
Seita.9G561200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57572729-57577728 Setaria italica
Seita.9G561200 5.0kb downstream 5.0kb downstream 10469 true scaffold_9: 57577729-57588197 Setaria italica
Seita.9G561200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57583198-57588197 Setaria italica
Seita.9G561200 10.0kb upstream 10.0kb upstream 15469 true scaffold_9: 57567729-57583197 Setaria italica
Seita.9G561200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57567729-57577728 Setaria italica
Seita.9G561200 10.0kb downstream 10.0kb downstream 15469 true scaffold_9: 57577729-57593197 Setaria italica
Seita.9G561200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57583198-57593197 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199113 5267 Panicoideae View MSA
124588626 5269 Grass View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.247        
cufflinks 9.517       High
cufflinks 0.287        
cufflinks 0.306        
cufflinks 1.215        
cufflinks 13.677     High High
cufflinks 1.054        
cufflinks 0.776        
cufflinks 2.7       High
cufflinks 0.338        
cufflinks 0.068     Low Low
cufflinks 0.612        
cufflinks 1.226        
cufflinks 0.254        
cufflinks 0.453        
cufflinks 0.38        
cufflinks 0.487        
cufflinks 0.412        
cufflinks 0.287        
cufflinks 0.73        

0 Strain