Gene : Seita.9G567700 S. italica v2.2
Defline:  (1 of 2) KOG4709 - Uncharacterized conserved protein Genomic Order:  5677
Name:  ? Seita.9G567700 Secondary Identifier:  ? PAC:32688585
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G567700 0.5kb upstream 0.5kb upstream 3342 true scaffold_9: 58046103-58049444 Setaria italica
Seita.9G567700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58046103-58046602 Setaria italica
Seita.9G567700 0.5kb downstream 0.5kb downstream 3342 true scaffold_9: 58046603-58049944 Setaria italica
Seita.9G567700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58049445-58049944 Setaria italica
Seita.9G567700 1.0kb upstream 1.0kb upstream 3842 true scaffold_9: 58045603-58049444 Setaria italica
Seita.9G567700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58045603-58046602 Setaria italica
Seita.9G567700 1.0kb downstream 1.0kb downstream 3842 true scaffold_9: 58046603-58050444 Setaria italica
Seita.9G567700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58049445-58050444 Setaria italica
Seita.9G567700 2.0kb upstream 2.0kb upstream 4842 true scaffold_9: 58044603-58049444 Setaria italica
Seita.9G567700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58044603-58046602 Setaria italica
Seita.9G567700 2.0kb downstream 2.0kb downstream 4842 true scaffold_9: 58046603-58051444 Setaria italica
Seita.9G567700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58049445-58051444 Setaria italica
Seita.9G567700 5.0kb upstream 5.0kb upstream 7842 true scaffold_9: 58041603-58049444 Setaria italica
Seita.9G567700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58041603-58046602 Setaria italica
Seita.9G567700 5.0kb downstream 5.0kb downstream 7842 true scaffold_9: 58046603-58054444 Setaria italica
Seita.9G567700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58049445-58054444 Setaria italica
Seita.9G567700 10.0kb upstream 10.0kb upstream 12842 true scaffold_9: 58036603-58049444 Setaria italica
Seita.9G567700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58036603-58046602 Setaria italica
Seita.9G567700 10.0kb downstream 10.0kb downstream 12842 true scaffold_9: 58046603-58059444 Setaria italica
Seita.9G567700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58049445-58059444 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041503 5273 Angiosperm View MSA
122191301 5267 Panicoideae View MSA
124580069 5269 Grass View MSA
121347582 5274 Embryophyte View MSA
123426889 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.609        
cufflinks 11.092        
cufflinks 4.804       Low
cufflinks 4.485       Low
cufflinks 5.496       Low
cufflinks 12.276       High
cufflinks 7.055        
cufflinks 9.858        
cufflinks 9.673        
cufflinks 4.879       Low
cufflinks 8.929        
cufflinks 12.512       High
cufflinks 5.942        
cufflinks 7.419        
cufflinks 13.218       High
cufflinks 5.958        
cufflinks 16.251     High High
cufflinks 7.078        
cufflinks 6.431        
cufflinks 11.351        

0 Strain