Gene : Seita.9G568100 S. italica v2.2
Defline:  (1 of 3) PTHR12428//PTHR12428:SF21 - OXA1 Genomic Order:  5681
Name:  ? Seita.9G568100 Secondary Identifier:  ? PAC:32690146
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G568100 0.5kb upstream 0.5kb upstream 4568 true scaffold_9: 58064955-58069522 Setaria italica
Seita.9G568100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58069023-58069522 Setaria italica
Seita.9G568100 0.5kb downstream 0.5kb downstream 4568 true scaffold_9: 58064455-58069022 Setaria italica
Seita.9G568100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58064455-58064954 Setaria italica
Seita.9G568100 1.0kb upstream 1.0kb upstream 5068 true scaffold_9: 58064955-58070022 Setaria italica
Seita.9G568100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58069023-58070022 Setaria italica
Seita.9G568100 1.0kb downstream 1.0kb downstream 5068 true scaffold_9: 58063955-58069022 Setaria italica
Seita.9G568100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58063955-58064954 Setaria italica
Seita.9G568100 2.0kb upstream 2.0kb upstream 6068 true scaffold_9: 58064955-58071022 Setaria italica
Seita.9G568100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58069023-58071022 Setaria italica
Seita.9G568100 2.0kb downstream 2.0kb downstream 6068 true scaffold_9: 58062955-58069022 Setaria italica
Seita.9G568100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58062955-58064954 Setaria italica
Seita.9G568100 5.0kb upstream 5.0kb upstream 9068 true scaffold_9: 58064955-58074022 Setaria italica
Seita.9G568100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58069023-58074022 Setaria italica
Seita.9G568100 5.0kb downstream 5.0kb downstream 9068 true scaffold_9: 58059955-58069022 Setaria italica
Seita.9G568100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58059955-58064954 Setaria italica
Seita.9G568100 10.0kb upstream 10.0kb upstream 14068 true scaffold_9: 58064955-58079022 Setaria italica
Seita.9G568100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58069023-58079022 Setaria italica
Seita.9G568100 10.0kb downstream 10.0kb downstream 14068 true scaffold_9: 58054955-58069022 Setaria italica
Seita.9G568100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58054955-58064954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185006 5267 Panicoideae View MSA
124573300 5269 Grass View MSA
122051610 5273 Angiosperm View MSA
121347323 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.555        
cufflinks 6.942       High
cufflinks 3.142       Low
cufflinks 2.376       Low
cufflinks 3.095       Low
cufflinks 6.756        
cufflinks 4.305        
cufflinks 6.647        
cufflinks 5.319        
cufflinks 6.801        
cufflinks 5.397        
cufflinks 6.274        
cufflinks 3.524        
cufflinks 4.772        
cufflinks 6.154        
cufflinks 3.834        
cufflinks 7.313       High
cufflinks 3.107       Low
cufflinks 3.847        
cufflinks 7.595       High

0 Strain