Gene : Seita.9G568900 S. italica v2.2
Defline:  (1 of 1) 2.7.1.52 - Fucokinase / L-fucose kinase Genomic Order:  5689
Name:  ? Seita.9G568900 Secondary Identifier:  ? PAC:32693608
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G568900 0.5kb upstream 0.5kb upstream 7370 true scaffold_9: 58115704-58123073 Setaria italica
Seita.9G568900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58115704-58116203 Setaria italica
Seita.9G568900 0.5kb downstream 0.5kb downstream 7370 true scaffold_9: 58116204-58123573 Setaria italica
Seita.9G568900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58123074-58123573 Setaria italica
Seita.9G568900 1.0kb upstream 1.0kb upstream 7870 true scaffold_9: 58115204-58123073 Setaria italica
Seita.9G568900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58115204-58116203 Setaria italica
Seita.9G568900 1.0kb downstream 1.0kb downstream 7870 true scaffold_9: 58116204-58124073 Setaria italica
Seita.9G568900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58123074-58124073 Setaria italica
Seita.9G568900 2.0kb upstream 2.0kb upstream 8870 true scaffold_9: 58114204-58123073 Setaria italica
Seita.9G568900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58114204-58116203 Setaria italica
Seita.9G568900 2.0kb downstream 2.0kb downstream 8870 true scaffold_9: 58116204-58125073 Setaria italica
Seita.9G568900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58123074-58125073 Setaria italica
Seita.9G568900 5.0kb upstream 5.0kb upstream 11870 true scaffold_9: 58111204-58123073 Setaria italica
Seita.9G568900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58111204-58116203 Setaria italica
Seita.9G568900 5.0kb downstream 5.0kb downstream 11870 true scaffold_9: 58116204-58128073 Setaria italica
Seita.9G568900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58123074-58128073 Setaria italica
Seita.9G568900 10.0kb upstream 10.0kb upstream 16870 true scaffold_9: 58106204-58123073 Setaria italica
Seita.9G568900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58106204-58116203 Setaria italica
Seita.9G568900 10.0kb downstream 10.0kb downstream 16870 true scaffold_9: 58116204-58133073 Setaria italica
Seita.9G568900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58123074-58133073 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188198 5267 Panicoideae View MSA
124577010 5269 Grass View MSA
122043960 5273 Angiosperm View MSA
121344120 5274 Embryophyte View MSA
123379978 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.269       High
cufflinks 9.17       High
cufflinks 6.623        
cufflinks 5.721       Low
cufflinks 5.861        
cufflinks 7.994        
cufflinks 8.235        
cufflinks 5.46       Low
cufflinks 5.58       Low
cufflinks 6.159        
cufflinks 9.195       High
cufflinks 6.682        
cufflinks 7.406        
cufflinks 6.522        
cufflinks 9.281       High
cufflinks 8.472        
cufflinks 8.203        
cufflinks 7.907        
cufflinks 4.786       Low
cufflinks 7.779        

0 Strain