Gene : Seita.9G578200 S. italica v2.2
Defline:  (1 of 8) PF00176//PF00271 - SNF2 family N-terminal domain (SNF2_N) // Helicase conserved C-terminal domain (Helicase_C) Genomic Order:  5782
Name:  ? Seita.9G578200 Secondary Identifier:  ? PAC:32689293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G578200 0.5kb upstream 0.5kb upstream 8323 true scaffold_9: 58688505-58696827 Setaria italica
Seita.9G578200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58696328-58696827 Setaria italica
Seita.9G578200 0.5kb downstream 0.5kb downstream 8323 true scaffold_9: 58688005-58696327 Setaria italica
Seita.9G578200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58688005-58688504 Setaria italica
Seita.9G578200 1.0kb upstream 1.0kb upstream 8823 true scaffold_9: 58688505-58697327 Setaria italica
Seita.9G578200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58696328-58697327 Setaria italica
Seita.9G578200 1.0kb downstream 1.0kb downstream 8823 true scaffold_9: 58687505-58696327 Setaria italica
Seita.9G578200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58687505-58688504 Setaria italica
Seita.9G578200 2.0kb upstream 2.0kb upstream 9823 true scaffold_9: 58688505-58698327 Setaria italica
Seita.9G578200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58696328-58698327 Setaria italica
Seita.9G578200 2.0kb downstream 2.0kb downstream 9823 true scaffold_9: 58686505-58696327 Setaria italica
Seita.9G578200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58686505-58688504 Setaria italica
Seita.9G578200 5.0kb upstream 5.0kb upstream 12823 true scaffold_9: 58688505-58701327 Setaria italica
Seita.9G578200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58696328-58701327 Setaria italica
Seita.9G578200 5.0kb downstream 5.0kb downstream 12823 true scaffold_9: 58683505-58696327 Setaria italica
Seita.9G578200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58683505-58688504 Setaria italica
Seita.9G578200 10.0kb upstream 10.0kb upstream 17823 true scaffold_9: 58688505-58706327 Setaria italica
Seita.9G578200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58696328-58706327 Setaria italica
Seita.9G578200 10.0kb downstream 10.0kb downstream 17823 true scaffold_9: 58678505-58696327 Setaria italica
Seita.9G578200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58678505-58688504 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026277 5273 Angiosperm View MSA
122182460 5267 Panicoideae View MSA
124570567 5269 Grass View MSA
121347907 5274 Embryophyte View MSA
123380672 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.534       High
cufflinks 0.525        
cufflinks 0.252       Low
cufflinks 0.191       Low
cufflinks 0.189       Low
cufflinks 0.499        
cufflinks 0.495        
cufflinks 0.503        
cufflinks 0.27       Low
cufflinks 0.691        
cufflinks 0.898        
cufflinks 1.659       High
cufflinks 0.738        
cufflinks 0.452        
cufflinks 0.978        
cufflinks 0.727        
cufflinks 1.286       High
cufflinks 0.972        
cufflinks 0.214       Low
cufflinks 1.083        

0 Strain