Gene : Seita.9G579600 S. italica v2.2
Defline:  (1 of 1) PTHR24093:SF333 - ATPASE 5, PLASMA MEMBRANE-TYPE-RELATED Genomic Order:  5796
Name:  ? Seita.9G579600 Secondary Identifier:  ? PAC:32693183
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G579600 0.5kb upstream 0.5kb upstream 8155 true scaffold_9: 58789612-58797766 Setaria italica
Seita.9G579600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58797267-58797766 Setaria italica
Seita.9G579600 0.5kb downstream 0.5kb downstream 8155 true scaffold_9: 58789112-58797266 Setaria italica
Seita.9G579600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58789112-58789611 Setaria italica
Seita.9G579600 1.0kb upstream 1.0kb upstream 8655 true scaffold_9: 58789612-58798266 Setaria italica
Seita.9G579600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58797267-58798266 Setaria italica
Seita.9G579600 1.0kb downstream 1.0kb downstream 8655 true scaffold_9: 58788612-58797266 Setaria italica
Seita.9G579600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58788612-58789611 Setaria italica
Seita.9G579600 2.0kb upstream 2.0kb upstream 9655 true scaffold_9: 58789612-58799266 Setaria italica
Seita.9G579600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58797267-58799266 Setaria italica
Seita.9G579600 2.0kb downstream 2.0kb downstream 9655 true scaffold_9: 58787612-58797266 Setaria italica
Seita.9G579600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58787612-58789611 Setaria italica
Seita.9G579600 5.0kb upstream 5.0kb upstream 12655 true scaffold_9: 58789612-58802266 Setaria italica
Seita.9G579600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58797267-58802266 Setaria italica
Seita.9G579600 5.0kb downstream 5.0kb downstream 12655 true scaffold_9: 58784612-58797266 Setaria italica
Seita.9G579600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58784612-58789611 Setaria italica
Seita.9G579600 10.0kb upstream 10.0kb upstream 17655 true scaffold_9: 58789612-58807266 Setaria italica
Seita.9G579600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58797267-58807266 Setaria italica
Seita.9G579600 10.0kb downstream 10.0kb downstream 17655 true scaffold_9: 58779612-58797266 Setaria italica
Seita.9G579600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58779612-58789611 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177262 5267 Panicoideae View MSA
124575392 5269 Grass View MSA
122049671 5273 Angiosperm View MSA
121311532 5274 Embryophyte View MSA
123428375 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.607       High
cufflinks 1.686        
cufflinks 1.53        
cufflinks 1.285        
cufflinks 1.551        
cufflinks 1.719        
cufflinks 2.328       High
cufflinks 1.636        
cufflinks 1.239        
cufflinks 0.885       Low
cufflinks 1.564        
cufflinks 1.681        
cufflinks 1.585        
cufflinks 1.083       Low
cufflinks 1.562        
cufflinks 2.474       High
cufflinks 1.3        
cufflinks 1.896        
cufflinks 1.074       Low
cufflinks 1.499        

0 Strain