Gene : IAA30 A. thaliana TAIR10
Primary Identifier:  ? AT3G62100 Defline:  (1 of 2) PTHR31734//PTHR31734:SF15 - FAMILY NOT NAMED // AUXIN-RESPONSIVE PROTEIN IAA20-RELATED
Genomic Order:  5288 Name:  ? AT3G62100
Secondary Identifier:  ? PAC:19662348
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62100 0.5kb upstream 0.5kb upstream 1471 true Chr3: 22995291-22996761 Arabidopsis thaliana
AT3G62100 0.5kb upstream 0.5kb upstream 500 false Chr3: 22995291-22995790 Arabidopsis thaliana
AT3G62100 0.5kb downstream 0.5kb downstream 1471 true Chr3: 22995791-22997261 Arabidopsis thaliana
AT3G62100 0.5kb downstream 0.5kb downstream 500 false Chr3: 22996762-22997261 Arabidopsis thaliana
AT3G62100 1.0kb upstream 1.0kb upstream 1971 true Chr3: 22994791-22996761 Arabidopsis thaliana
AT3G62100 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22994791-22995790 Arabidopsis thaliana
AT3G62100 1.0kb downstream 1.0kb downstream 1971 true Chr3: 22995791-22997761 Arabidopsis thaliana
AT3G62100 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22996762-22997761 Arabidopsis thaliana
AT3G62100 2.0kb upstream 2.0kb upstream 2971 true Chr3: 22993791-22996761 Arabidopsis thaliana
AT3G62100 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22993791-22995790 Arabidopsis thaliana
AT3G62100 2.0kb downstream 2.0kb downstream 2971 true Chr3: 22995791-22998761 Arabidopsis thaliana
AT3G62100 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22996762-22998761 Arabidopsis thaliana
AT3G62100 5.0kb upstream 5.0kb upstream 5971 true Chr3: 22990791-22996761 Arabidopsis thaliana
AT3G62100 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22990791-22995790 Arabidopsis thaliana
AT3G62100 5.0kb downstream 5.0kb downstream 5971 true Chr3: 22995791-23001761 Arabidopsis thaliana
AT3G62100 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22996762-23001761 Arabidopsis thaliana
AT3G62100 10.0kb upstream 10.0kb upstream 10971 true Chr3: 22985791-22996761 Arabidopsis thaliana
AT3G62100 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22985791-22995790 Arabidopsis thaliana
AT3G62100 10.0kb downstream 10.0kb downstream 10971 true Chr3: 22995791-23006761 Arabidopsis thaliana
AT3G62100 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22996762-23006761 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379958 5261 Brassicaceae View MSA
123837021 5264 Brassicales-Malvales View MSA
124351119 5266 SBM View MSA
124238825 5268 Malvidae View MSA
124071177 5270 Rosid View MSA
123752177 5271 Pentapetalae View MSA
122794866 5272 Eudicot View MSA
122051273 5273 Angiosperm View MSA
121350717 5274 Embryophyte View MSA
123381856 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.536        
cufflinks 2.691        
cufflinks 0.221     Low Low
cufflinks 4.685        
cufflinks 0.204     Low Low
cufflinks 7.391       High

0 Strain