Gene : AT3G62130 A. thaliana TAIR10
Defline:  (1 of 2) 5.1.1.17 - Isopenicillin-N epimerase Genomic Order:  5291
Name:  ? AT3G62130 Secondary Identifier:  ? PAC:19658734
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62130 0.5kb upstream 0.5kb upstream 2576 true Chr3: 23004431-23007006 Arabidopsis thaliana
AT3G62130 0.5kb upstream 0.5kb upstream 500 false Chr3: 23004431-23004930 Arabidopsis thaliana
AT3G62130 0.5kb downstream 0.5kb downstream 2576 true Chr3: 23004931-23007506 Arabidopsis thaliana
AT3G62130 0.5kb downstream 0.5kb downstream 500 false Chr3: 23007007-23007506 Arabidopsis thaliana
AT3G62130 1.0kb upstream 1.0kb upstream 3076 true Chr3: 23003931-23007006 Arabidopsis thaliana
AT3G62130 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23003931-23004930 Arabidopsis thaliana
AT3G62130 1.0kb downstream 1.0kb downstream 3076 true Chr3: 23004931-23008006 Arabidopsis thaliana
AT3G62130 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23007007-23008006 Arabidopsis thaliana
AT3G62130 2.0kb upstream 2.0kb upstream 4076 true Chr3: 23002931-23007006 Arabidopsis thaliana
AT3G62130 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23002931-23004930 Arabidopsis thaliana
AT3G62130 2.0kb downstream 2.0kb downstream 4076 true Chr3: 23004931-23009006 Arabidopsis thaliana
AT3G62130 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23007007-23009006 Arabidopsis thaliana
AT3G62130 5.0kb upstream 5.0kb upstream 7076 true Chr3: 22999931-23007006 Arabidopsis thaliana
AT3G62130 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22999931-23004930 Arabidopsis thaliana
AT3G62130 5.0kb downstream 5.0kb downstream 7076 true Chr3: 23004931-23012006 Arabidopsis thaliana
AT3G62130 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23007007-23012006 Arabidopsis thaliana
AT3G62130 10.0kb upstream 10.0kb upstream 12076 true Chr3: 22994931-23007006 Arabidopsis thaliana
AT3G62130 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22994931-23004930 Arabidopsis thaliana
AT3G62130 10.0kb downstream 10.0kb downstream 12076 true Chr3: 23004931-23017006 Arabidopsis thaliana
AT3G62130 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23007007-23017006 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370643 5261 Brassicaceae View MSA
123836014 5264 Brassicales-Malvales View MSA
124340484 5266 SBM View MSA
124242863 5268 Malvidae View MSA
124063625 5270 Rosid View MSA
123741535 5271 Pentapetalae View MSA
122792322 5272 Eudicot View MSA
122047079 5273 Angiosperm View MSA
121347897 5274 Embryophyte View MSA
123426680 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.049       Low
cufflinks 26.921       High
cufflinks 16.403        
cufflinks 24.898        
cufflinks 18.279        
cufflinks 19.603        

0 Strain