Gene : AT3G62140 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13495 - NEFA-INTERACTING NUCLEAR PROTEIN NIP30 Genomic Order:  5292
Name:  ? AT3G62140 Secondary Identifier:  ? PAC:19658889
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62140 0.5kb upstream 0.5kb upstream 2167 true Chr3: 23006583-23008749 Arabidopsis thaliana
AT3G62140 0.5kb upstream 0.5kb upstream 500 false Chr3: 23006583-23007082 Arabidopsis thaliana
AT3G62140 0.5kb downstream 0.5kb downstream 2167 true Chr3: 23007083-23009249 Arabidopsis thaliana
AT3G62140 0.5kb downstream 0.5kb downstream 500 false Chr3: 23008750-23009249 Arabidopsis thaliana
AT3G62140 1.0kb upstream 1.0kb upstream 2667 true Chr3: 23006083-23008749 Arabidopsis thaliana
AT3G62140 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23006083-23007082 Arabidopsis thaliana
AT3G62140 1.0kb downstream 1.0kb downstream 2667 true Chr3: 23007083-23009749 Arabidopsis thaliana
AT3G62140 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23008750-23009749 Arabidopsis thaliana
AT3G62140 2.0kb upstream 2.0kb upstream 3667 true Chr3: 23005083-23008749 Arabidopsis thaliana
AT3G62140 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23005083-23007082 Arabidopsis thaliana
AT3G62140 2.0kb downstream 2.0kb downstream 3667 true Chr3: 23007083-23010749 Arabidopsis thaliana
AT3G62140 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23008750-23010749 Arabidopsis thaliana
AT3G62140 5.0kb upstream 5.0kb upstream 6667 true Chr3: 23002083-23008749 Arabidopsis thaliana
AT3G62140 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23002083-23007082 Arabidopsis thaliana
AT3G62140 5.0kb downstream 5.0kb downstream 6667 true Chr3: 23007083-23013749 Arabidopsis thaliana
AT3G62140 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23008750-23013749 Arabidopsis thaliana
AT3G62140 10.0kb upstream 10.0kb upstream 11667 true Chr3: 22997083-23008749 Arabidopsis thaliana
AT3G62140 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22997083-23007082 Arabidopsis thaliana
AT3G62140 10.0kb downstream 10.0kb downstream 11667 true Chr3: 23007083-23018749 Arabidopsis thaliana
AT3G62140 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23008750-23018749 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366192 5261 Brassicaceae View MSA
123830029 5264 Brassicales-Malvales View MSA
124343062 5266 SBM View MSA
124241413 5268 Malvidae View MSA
124063271 5270 Rosid View MSA
123737480 5271 Pentapetalae View MSA
122787094 5272 Eudicot View MSA
122047119 5273 Angiosperm View MSA
121346332 5274 Embryophyte View MSA
123425229 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.522        
cufflinks 8.58        
cufflinks 7.209       Low
cufflinks 9.077       High
cufflinks 7.214       Low
cufflinks 8.706        

0 Strain