Gene : AT3G61560 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10994:SF89 - RETICULON-LIKE PROTEIN B5-RELATED Genomic Order:  5223
Name:  ? AT3G61560 Secondary Identifier:  ? PAC:19662395
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G61560 0.5kb upstream 0.5kb upstream 2863 true Chr3: 22777329-22780191 Arabidopsis thaliana
AT3G61560 0.5kb upstream 0.5kb upstream 500 false Chr3: 22777329-22777828 Arabidopsis thaliana
AT3G61560 0.5kb downstream 0.5kb downstream 2863 true Chr3: 22777829-22780691 Arabidopsis thaliana
AT3G61560 0.5kb downstream 0.5kb downstream 500 false Chr3: 22780192-22780691 Arabidopsis thaliana
AT3G61560 1.0kb upstream 1.0kb upstream 3363 true Chr3: 22776829-22780191 Arabidopsis thaliana
AT3G61560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22776829-22777828 Arabidopsis thaliana
AT3G61560 1.0kb downstream 1.0kb downstream 3363 true Chr3: 22777829-22781191 Arabidopsis thaliana
AT3G61560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22780192-22781191 Arabidopsis thaliana
AT3G61560 2.0kb upstream 2.0kb upstream 4363 true Chr3: 22775829-22780191 Arabidopsis thaliana
AT3G61560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22775829-22777828 Arabidopsis thaliana
AT3G61560 2.0kb downstream 2.0kb downstream 4363 true Chr3: 22777829-22782191 Arabidopsis thaliana
AT3G61560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22780192-22782191 Arabidopsis thaliana
AT3G61560 5.0kb upstream 5.0kb upstream 7363 true Chr3: 22772829-22780191 Arabidopsis thaliana
AT3G61560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22772829-22777828 Arabidopsis thaliana
AT3G61560 5.0kb downstream 5.0kb downstream 7363 true Chr3: 22777829-22785191 Arabidopsis thaliana
AT3G61560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22780192-22785191 Arabidopsis thaliana
AT3G61560 10.0kb upstream 10.0kb upstream 12363 true Chr3: 22767829-22780191 Arabidopsis thaliana
AT3G61560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22767829-22777828 Arabidopsis thaliana
AT3G61560 10.0kb downstream 10.0kb downstream 12363 true Chr3: 22777829-22790191 Arabidopsis thaliana
AT3G61560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22780192-22790191 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330060 5261 Brassicaceae Singleton cluster - no MSA
123771332 5264 Brassicales-Malvales Singleton cluster - no MSA
124269863 5266 SBM Singleton cluster - no MSA
124125978 5268 Malvidae Singleton cluster - no MSA
123854917 5270 Rosid Singleton cluster - no MSA
123749221 5271 Pentapetalae View MSA
122790829 5272 Eudicot View MSA
122049511 5273 Angiosperm View MSA
123429002 5275 Viridiplantae View MSA
121351639 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.648       Low
cufflinks 8.697       High
cufflinks 2.908        
cufflinks 7.453        
cufflinks 3.072        
cufflinks 8.256        

0 Strain