Gene : AT3G61310 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31500:SF10 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  5197
Name:  ? AT3G61310 Secondary Identifier:  ? PAC:19661165
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G61310 0.5kb upstream 0.5kb upstream 2739 true Chr3: 22690596-22693334 Arabidopsis thaliana
AT3G61310 0.5kb upstream 0.5kb upstream 500 false Chr3: 22692835-22693334 Arabidopsis thaliana
AT3G61310 0.5kb downstream 0.5kb downstream 2739 true Chr3: 22690096-22692834 Arabidopsis thaliana
AT3G61310 0.5kb downstream 0.5kb downstream 500 false Chr3: 22690096-22690595 Arabidopsis thaliana
AT3G61310 1.0kb upstream 1.0kb upstream 3239 true Chr3: 22690596-22693834 Arabidopsis thaliana
AT3G61310 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22692835-22693834 Arabidopsis thaliana
AT3G61310 1.0kb downstream 1.0kb downstream 3239 true Chr3: 22689596-22692834 Arabidopsis thaliana
AT3G61310 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22689596-22690595 Arabidopsis thaliana
AT3G61310 2.0kb upstream 2.0kb upstream 4239 true Chr3: 22690596-22694834 Arabidopsis thaliana
AT3G61310 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22692835-22694834 Arabidopsis thaliana
AT3G61310 2.0kb downstream 2.0kb downstream 4239 true Chr3: 22688596-22692834 Arabidopsis thaliana
AT3G61310 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22688596-22690595 Arabidopsis thaliana
AT3G61310 5.0kb upstream 5.0kb upstream 7239 true Chr3: 22690596-22697834 Arabidopsis thaliana
AT3G61310 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22692835-22697834 Arabidopsis thaliana
AT3G61310 5.0kb downstream 5.0kb downstream 7239 true Chr3: 22685596-22692834 Arabidopsis thaliana
AT3G61310 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22685596-22690595 Arabidopsis thaliana
AT3G61310 10.0kb upstream 10.0kb upstream 12239 true Chr3: 22690596-22702834 Arabidopsis thaliana
AT3G61310 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22692835-22702834 Arabidopsis thaliana
AT3G61310 10.0kb downstream 10.0kb downstream 12239 true Chr3: 22680596-22692834 Arabidopsis thaliana
AT3G61310 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22680596-22690595 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
122363187 5261 Brassicaceae View MSA
123837536 5264 Brassicales-Malvales View MSA
124342776 5266 SBM View MSA
124237789 5268 Malvidae View MSA
124064168 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.48        
cufflinks 12.313        
cufflinks 8.221       Low
cufflinks 10.195        
cufflinks 8.528        
cufflinks 16.937       High

0 Strain