Gene : HDG1 A. thaliana TAIR10
Primary Identifier:  ? AT3G61150 Defline:  (1 of 37) K09338 - homeobox-leucine zipper protein (HD-ZIP)
Genomic Order:  5177 Name:  ? AT3G61150
Secondary Identifier:  ? PAC:19659374
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G61150 0.5kb upstream 0.5kb upstream 5016 true Chr3: 22630108-22635123 Arabidopsis thaliana
AT3G61150 0.5kb upstream 0.5kb upstream 500 false Chr3: 22630108-22630607 Arabidopsis thaliana
AT3G61150 0.5kb downstream 0.5kb downstream 5016 true Chr3: 22630608-22635623 Arabidopsis thaliana
AT3G61150 0.5kb downstream 0.5kb downstream 500 false Chr3: 22635124-22635623 Arabidopsis thaliana
AT3G61150 1.0kb upstream 1.0kb upstream 5516 true Chr3: 22629608-22635123 Arabidopsis thaliana
AT3G61150 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22629608-22630607 Arabidopsis thaliana
AT3G61150 1.0kb downstream 1.0kb downstream 5516 true Chr3: 22630608-22636123 Arabidopsis thaliana
AT3G61150 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22635124-22636123 Arabidopsis thaliana
AT3G61150 2.0kb upstream 2.0kb upstream 6516 true Chr3: 22628608-22635123 Arabidopsis thaliana
AT3G61150 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22628608-22630607 Arabidopsis thaliana
AT3G61150 2.0kb downstream 2.0kb downstream 6516 true Chr3: 22630608-22637123 Arabidopsis thaliana
AT3G61150 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22635124-22637123 Arabidopsis thaliana
AT3G61150 5.0kb upstream 5.0kb upstream 9516 true Chr3: 22625608-22635123 Arabidopsis thaliana
AT3G61150 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22625608-22630607 Arabidopsis thaliana
AT3G61150 5.0kb downstream 5.0kb downstream 9516 true Chr3: 22630608-22640123 Arabidopsis thaliana
AT3G61150 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22635124-22640123 Arabidopsis thaliana
AT3G61150 10.0kb upstream 10.0kb upstream 14516 true Chr3: 22620608-22635123 Arabidopsis thaliana
AT3G61150 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22620608-22630607 Arabidopsis thaliana
AT3G61150 10.0kb downstream 10.0kb downstream 14516 true Chr3: 22630608-22645123 Arabidopsis thaliana
AT3G61150 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22635124-22645123 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371211 5261 Brassicaceae View MSA
123800125 5264 Brassicales-Malvales View MSA
124297574 5266 SBM View MSA
124149426 5268 Malvidae View MSA
124063291 5270 Rosid View MSA
123740352 5271 Pentapetalae View MSA
122790073 5272 Eudicot View MSA
122048483 5273 Angiosperm View MSA
121350910 5274 Embryophyte View MSA
123381934 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.856       High
cufflinks 1.5        
cufflinks 7.055        
cufflinks 1.394        
cufflinks 5.706        
cufflinks 1.628        

0 Strain