Gene : HAM2 A. thaliana TAIR10
Primary Identifier:  ? AT3G60630 Defline:  (1 of 3) PTHR31636//PTHR31636:SF11 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 22-RELATED
Genomic Order:  5119 Name:  ? AT3G60630
Secondary Identifier:  ? PAC:19664707
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G60630 0.5kb upstream 0.5kb upstream 2744 true Chr3: 22410365-22413108 Arabidopsis thaliana
AT3G60630 0.5kb upstream 0.5kb upstream 500 false Chr3: 22412609-22413108 Arabidopsis thaliana
AT3G60630 0.5kb downstream 0.5kb downstream 2744 true Chr3: 22409865-22412608 Arabidopsis thaliana
AT3G60630 0.5kb downstream 0.5kb downstream 500 false Chr3: 22409865-22410364 Arabidopsis thaliana
AT3G60630 1.0kb upstream 1.0kb upstream 3244 true Chr3: 22410365-22413608 Arabidopsis thaliana
AT3G60630 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22412609-22413608 Arabidopsis thaliana
AT3G60630 1.0kb downstream 1.0kb downstream 3244 true Chr3: 22409365-22412608 Arabidopsis thaliana
AT3G60630 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22409365-22410364 Arabidopsis thaliana
AT3G60630 2.0kb upstream 2.0kb upstream 4244 true Chr3: 22410365-22414608 Arabidopsis thaliana
AT3G60630 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22412609-22414608 Arabidopsis thaliana
AT3G60630 2.0kb downstream 2.0kb downstream 4244 true Chr3: 22408365-22412608 Arabidopsis thaliana
AT3G60630 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22408365-22410364 Arabidopsis thaliana
AT3G60630 5.0kb upstream 5.0kb upstream 7244 true Chr3: 22410365-22417608 Arabidopsis thaliana
AT3G60630 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22412609-22417608 Arabidopsis thaliana
AT3G60630 5.0kb downstream 5.0kb downstream 7244 true Chr3: 22405365-22412608 Arabidopsis thaliana
AT3G60630 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22405365-22410364 Arabidopsis thaliana
AT3G60630 10.0kb upstream 10.0kb upstream 12244 true Chr3: 22410365-22422608 Arabidopsis thaliana
AT3G60630 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22412609-22422608 Arabidopsis thaliana
AT3G60630 10.0kb downstream 10.0kb downstream 12244 true Chr3: 22400365-22412608 Arabidopsis thaliana
AT3G60630 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22400365-22410364 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374492 5261 Brassicaceae View MSA
123800767 5264 Brassicales-Malvales View MSA
124298139 5266 SBM View MSA
124250947 5268 Malvidae View MSA
124067297 5270 Rosid View MSA
123748991 5271 Pentapetalae View MSA
122793941 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.877        
cufflinks 12.885        
cufflinks 10.515        
cufflinks 12.656        
cufflinks 9.744       Low
cufflinks 13.805       High

0 Strain