Gene : AT4G00380 A. thaliana TAIR10
Defline:  (1 of 6) PTHR21596//PTHR21596:SF3 - RIBONUCLEASE P SUBUNIT P38 // F16A14.2-RELATED Genomic Order:  50
Name:  ? AT4G00380 Secondary Identifier:  ? PAC:19646885
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G00380 0.5kb upstream 0.5kb upstream 3516 true Chr4: 167459-170974 Arabidopsis thaliana
AT4G00380 0.5kb upstream 0.5kb upstream 500 false Chr4: 167459-167958 Arabidopsis thaliana
AT4G00380 0.5kb downstream 0.5kb downstream 3516 true Chr4: 167959-171474 Arabidopsis thaliana
AT4G00380 0.5kb downstream 0.5kb downstream 500 false Chr4: 170975-171474 Arabidopsis thaliana
AT4G00380 1.0kb upstream 1.0kb upstream 4016 true Chr4: 166959-170974 Arabidopsis thaliana
AT4G00380 1.0kb upstream 1.0kb upstream 1000 false Chr4: 166959-167958 Arabidopsis thaliana
AT4G00380 1.0kb downstream 1.0kb downstream 4016 true Chr4: 167959-171974 Arabidopsis thaliana
AT4G00380 1.0kb downstream 1.0kb downstream 1000 false Chr4: 170975-171974 Arabidopsis thaliana
AT4G00380 2.0kb upstream 2.0kb upstream 5016 true Chr4: 165959-170974 Arabidopsis thaliana
AT4G00380 2.0kb upstream 2.0kb upstream 2000 false Chr4: 165959-167958 Arabidopsis thaliana
AT4G00380 2.0kb downstream 2.0kb downstream 5016 true Chr4: 167959-172974 Arabidopsis thaliana
AT4G00380 2.0kb downstream 2.0kb downstream 2000 false Chr4: 170975-172974 Arabidopsis thaliana
AT4G00380 5.0kb upstream 5.0kb upstream 8016 true Chr4: 162959-170974 Arabidopsis thaliana
AT4G00380 5.0kb upstream 5.0kb upstream 5000 false Chr4: 162959-167958 Arabidopsis thaliana
AT4G00380 5.0kb downstream 5.0kb downstream 8016 true Chr4: 167959-175974 Arabidopsis thaliana
AT4G00380 5.0kb downstream 5.0kb downstream 5000 false Chr4: 170975-175974 Arabidopsis thaliana
AT4G00380 10.0kb upstream 10.0kb upstream 13016 true Chr4: 157959-170974 Arabidopsis thaliana
AT4G00380 10.0kb upstream 10.0kb upstream 10000 false Chr4: 157959-167958 Arabidopsis thaliana
AT4G00380 10.0kb downstream 10.0kb downstream 13016 true Chr4: 167959-180974 Arabidopsis thaliana
AT4G00380 10.0kb downstream 10.0kb downstream 10000 false Chr4: 170975-180974 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368722 5261 Brassicaceae View MSA
123834266 5264 Brassicales-Malvales View MSA
124338715 5266 SBM View MSA
124238102 5268 Malvidae View MSA
124066468 5270 Rosid View MSA
123741762 5271 Pentapetalae View MSA
122795900 5272 Eudicot View MSA
122047890 5273 Angiosperm View MSA
121350157 5274 Embryophyte View MSA
123381596 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.016        
cufflinks 6.469        
cufflinks 1.359        
cufflinks 5.789        
cufflinks 1.178       Low
cufflinks 6.188        

0 Strain