Gene : BRCA2(IV) A. thaliana TAIR10
Primary Identifier:  ? AT4G00020 Defline:  (1 of 2) K08775 - breast cancer 2 susceptibility protein (BRCA2, FANCD1)
Genomic Order:  2 Name:  ? AT4G00020
Secondary Identifier:  ? PAC:19647157
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G00020 0.5kb upstream 0.5kb upstream 8061 true Chr4: 2895-10955 Arabidopsis thaliana
AT4G00020 0.5kb upstream 0.5kb upstream 500 false Chr4: 10456-10955 Arabidopsis thaliana
AT4G00020 0.5kb downstream 0.5kb downstream 8061 true Chr4: 2395-10455 Arabidopsis thaliana
AT4G00020 0.5kb downstream 0.5kb downstream 500 false Chr4: 2395-2894 Arabidopsis thaliana
AT4G00020 1.0kb upstream 1.0kb upstream 8561 true Chr4: 2895-11455 Arabidopsis thaliana
AT4G00020 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10456-11455 Arabidopsis thaliana
AT4G00020 1.0kb downstream 1.0kb downstream 8561 true Chr4: 1895-10455 Arabidopsis thaliana
AT4G00020 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1895-2894 Arabidopsis thaliana
AT4G00020 2.0kb upstream 2.0kb upstream 9561 true Chr4: 2895-12455 Arabidopsis thaliana
AT4G00020 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10456-12455 Arabidopsis thaliana
AT4G00020 2.0kb downstream 2.0kb downstream 9561 true Chr4: 895-10455 Arabidopsis thaliana
AT4G00020 2.0kb downstream 2.0kb downstream 2000 false Chr4: 895-2894 Arabidopsis thaliana
AT4G00020 5.0kb upstream 5.0kb upstream 12561 true Chr4: 2895-15455 Arabidopsis thaliana
AT4G00020 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10456-15455 Arabidopsis thaliana
AT4G00020 5.0kb downstream 5.0kb downstream 10455 true Chr4: 1-10455 Arabidopsis thaliana
AT4G00020 5.0kb downstream 5.0kb downstream 2894 false Chr4: 1-2894 Arabidopsis thaliana
AT4G00020 10.0kb upstream 10.0kb upstream 17561 true Chr4: 2895-20455 Arabidopsis thaliana
AT4G00020 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10456-20455 Arabidopsis thaliana
AT4G00020 10.0kb downstream 10.0kb downstream 10455 true Chr4: 1-10455 Arabidopsis thaliana
AT4G00020 10.0kb downstream 10.0kb downstream 2894 false Chr4: 1-2894 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330666 5261 Brassicaceae Singleton cluster - no MSA
123771894 5264 Brassicales-Malvales Singleton cluster - no MSA
124270418 5266 SBM Singleton cluster - no MSA
124247927 5268 Malvidae View MSA
124050402 5270 Rosid View MSA
123749189 5271 Pentapetalae View MSA
122786519 5272 Eudicot View MSA
122044461 5273 Angiosperm View MSA
121310297 5274 Embryophyte View MSA
123425131 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.981        
cufflinks 1.43        
cufflinks 0.676        
cufflinks 1.31        
cufflinks 0.47       Low
cufflinks 1.611       High

0 Strain