Gene : AT4G00040 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  5
Name:  ? AT4G00040 Secondary Identifier:  ? PAC:19647176
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G00040 0.5kb upstream 0.5kb upstream 1953 true Chr4: 14127-16079 Arabidopsis thaliana
AT4G00040 0.5kb upstream 0.5kb upstream 500 false Chr4: 14127-14626 Arabidopsis thaliana
AT4G00040 0.5kb downstream 0.5kb downstream 1953 true Chr4: 14627-16579 Arabidopsis thaliana
AT4G00040 0.5kb downstream 0.5kb downstream 500 false Chr4: 16080-16579 Arabidopsis thaliana
AT4G00040 1.0kb upstream 1.0kb upstream 2453 true Chr4: 13627-16079 Arabidopsis thaliana
AT4G00040 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13627-14626 Arabidopsis thaliana
AT4G00040 1.0kb downstream 1.0kb downstream 2453 true Chr4: 14627-17079 Arabidopsis thaliana
AT4G00040 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16080-17079 Arabidopsis thaliana
AT4G00040 2.0kb upstream 2.0kb upstream 3453 true Chr4: 12627-16079 Arabidopsis thaliana
AT4G00040 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12627-14626 Arabidopsis thaliana
AT4G00040 2.0kb downstream 2.0kb downstream 3453 true Chr4: 14627-18079 Arabidopsis thaliana
AT4G00040 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16080-18079 Arabidopsis thaliana
AT4G00040 5.0kb upstream 5.0kb upstream 6453 true Chr4: 9627-16079 Arabidopsis thaliana
AT4G00040 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9627-14626 Arabidopsis thaliana
AT4G00040 5.0kb downstream 5.0kb downstream 6453 true Chr4: 14627-21079 Arabidopsis thaliana
AT4G00040 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16080-21079 Arabidopsis thaliana
AT4G00040 10.0kb upstream 10.0kb upstream 11453 true Chr4: 4627-16079 Arabidopsis thaliana
AT4G00040 10.0kb upstream 10.0kb upstream 10000 false Chr4: 4627-14626 Arabidopsis thaliana
AT4G00040 10.0kb downstream 10.0kb downstream 11453 true Chr4: 14627-26079 Arabidopsis thaliana
AT4G00040 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16080-26079 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376828 5261 Brassicaceae View MSA
123828982 5264 Brassicales-Malvales View MSA
124336806 5266 SBM View MSA
124239117 5268 Malvidae View MSA
124068304 5270 Rosid View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.744       Low
cufflinks 62.312     High High
cufflinks 25.779        
cufflinks 53.373     High  
cufflinks 22.557        
cufflinks 37.752     High  

0 Strain