Gene : AT3G66652 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13484//PTHR13484:SF0 - FIP1-LIKE 1 PROTEIN // PRE-MRNA 3'-END-PROCESSING FACTOR FIP1 Genomic Order:  646
Name:  ? AT3G66652 Secondary Identifier:  ? PAC:19659113
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G66652 0.5kb upstream 0.5kb upstream 4663 true Chr3: 2082894-2087556 Arabidopsis thaliana
AT3G66652 0.5kb upstream 0.5kb upstream 500 false Chr3: 2082894-2083393 Arabidopsis thaliana
AT3G66652 0.5kb downstream 0.5kb downstream 4663 true Chr3: 2083394-2088056 Arabidopsis thaliana
AT3G66652 0.5kb downstream 0.5kb downstream 500 false Chr3: 2087557-2088056 Arabidopsis thaliana
AT3G66652 1.0kb upstream 1.0kb upstream 5163 true Chr3: 2082394-2087556 Arabidopsis thaliana
AT3G66652 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2082394-2083393 Arabidopsis thaliana
AT3G66652 1.0kb downstream 1.0kb downstream 5163 true Chr3: 2083394-2088556 Arabidopsis thaliana
AT3G66652 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2087557-2088556 Arabidopsis thaliana
AT3G66652 2.0kb upstream 2.0kb upstream 6163 true Chr3: 2081394-2087556 Arabidopsis thaliana
AT3G66652 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2081394-2083393 Arabidopsis thaliana
AT3G66652 2.0kb downstream 2.0kb downstream 6163 true Chr3: 2083394-2089556 Arabidopsis thaliana
AT3G66652 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2087557-2089556 Arabidopsis thaliana
AT3G66652 5.0kb upstream 5.0kb upstream 9163 true Chr3: 2078394-2087556 Arabidopsis thaliana
AT3G66652 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2078394-2083393 Arabidopsis thaliana
AT3G66652 5.0kb downstream 5.0kb downstream 9163 true Chr3: 2083394-2092556 Arabidopsis thaliana
AT3G66652 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2087557-2092556 Arabidopsis thaliana
AT3G66652 10.0kb upstream 10.0kb upstream 14163 true Chr3: 2073394-2087556 Arabidopsis thaliana
AT3G66652 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2073394-2083393 Arabidopsis thaliana
AT3G66652 10.0kb downstream 10.0kb downstream 14163 true Chr3: 2083394-2097556 Arabidopsis thaliana
AT3G66652 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2087557-2097556 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371269 5261 Brassicaceae View MSA
123800138 5264 Brassicales-Malvales View MSA
124297586 5266 SBM View MSA
124248306 5268 Malvidae View MSA
124073044 5270 Rosid View MSA
123743134 5271 Pentapetalae View MSA
122794251 5272 Eudicot View MSA
122050325 5273 Angiosperm View MSA
121345578 5274 Embryophyte View MSA
123425422 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.305        
cufflinks 1.197        
cufflinks 1.062        
cufflinks 1.399       High
cufflinks 0.823       Low
cufflinks 1.179        

0 Strain