Gene : AT3G62970 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21319//PTHR21319:SF12 - RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 // RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  5377
Name:  ? AT3G62970 Secondary Identifier:  ? PAC:19661930
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62970 0.5kb upstream 0.5kb upstream 2791 true Chr3: 23270133-23272923 Arabidopsis thaliana
AT3G62970 0.5kb upstream 0.5kb upstream 500 false Chr3: 23270133-23270632 Arabidopsis thaliana
AT3G62970 0.5kb downstream 0.5kb downstream 2791 true Chr3: 23270633-23273423 Arabidopsis thaliana
AT3G62970 0.5kb downstream 0.5kb downstream 500 false Chr3: 23272924-23273423 Arabidopsis thaliana
AT3G62970 1.0kb upstream 1.0kb upstream 3291 true Chr3: 23269633-23272923 Arabidopsis thaliana
AT3G62970 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23269633-23270632 Arabidopsis thaliana
AT3G62970 1.0kb downstream 1.0kb downstream 3291 true Chr3: 23270633-23273923 Arabidopsis thaliana
AT3G62970 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23272924-23273923 Arabidopsis thaliana
AT3G62970 2.0kb upstream 2.0kb upstream 4291 true Chr3: 23268633-23272923 Arabidopsis thaliana
AT3G62970 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23268633-23270632 Arabidopsis thaliana
AT3G62970 2.0kb downstream 2.0kb downstream 4291 true Chr3: 23270633-23274923 Arabidopsis thaliana
AT3G62970 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23272924-23274923 Arabidopsis thaliana
AT3G62970 5.0kb upstream 5.0kb upstream 7291 true Chr3: 23265633-23272923 Arabidopsis thaliana
AT3G62970 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23265633-23270632 Arabidopsis thaliana
AT3G62970 5.0kb downstream 5.0kb downstream 7291 true Chr3: 23270633-23277923 Arabidopsis thaliana
AT3G62970 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23272924-23277923 Arabidopsis thaliana
AT3G62970 10.0kb upstream 10.0kb upstream 12291 true Chr3: 23260633-23272923 Arabidopsis thaliana
AT3G62970 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23260633-23270632 Arabidopsis thaliana
AT3G62970 10.0kb downstream 10.0kb downstream 12291 true Chr3: 23270633-23282923 Arabidopsis thaliana
AT3G62970 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23272924-23282923 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370745 5261 Brassicaceae View MSA
123831380 5264 Brassicales-Malvales View MSA
124321725 5266 SBM View MSA
124239052 5268 Malvidae View MSA
124050337 5270 Rosid View MSA
123740873 5271 Pentapetalae View MSA
122769993 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.063       Low
cufflinks 7.498       High
cufflinks 5.528        
cufflinks 7.4       High
cufflinks 6.374        
cufflinks 6.454        

0 Strain