Gene : AT3G62580 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23241//PTHR23241:SF55 - LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED // SUBFAMILY NOT NAMED Genomic Order:  5337
Name:  ? AT3G62580 Secondary Identifier:  ? PAC:19662778
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62580 0.5kb upstream 0.5kb upstream 1624 true Chr3: 23146328-23147951 Arabidopsis thaliana
AT3G62580 0.5kb upstream 0.5kb upstream 500 false Chr3: 23146328-23146827 Arabidopsis thaliana
AT3G62580 0.5kb downstream 0.5kb downstream 1624 true Chr3: 23146828-23148451 Arabidopsis thaliana
AT3G62580 0.5kb downstream 0.5kb downstream 500 false Chr3: 23147952-23148451 Arabidopsis thaliana
AT3G62580 1.0kb upstream 1.0kb upstream 2124 true Chr3: 23145828-23147951 Arabidopsis thaliana
AT3G62580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23145828-23146827 Arabidopsis thaliana
AT3G62580 1.0kb downstream 1.0kb downstream 2124 true Chr3: 23146828-23148951 Arabidopsis thaliana
AT3G62580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23147952-23148951 Arabidopsis thaliana
AT3G62580 2.0kb upstream 2.0kb upstream 3124 true Chr3: 23144828-23147951 Arabidopsis thaliana
AT3G62580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23144828-23146827 Arabidopsis thaliana
AT3G62580 2.0kb downstream 2.0kb downstream 3124 true Chr3: 23146828-23149951 Arabidopsis thaliana
AT3G62580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23147952-23149951 Arabidopsis thaliana
AT3G62580 5.0kb upstream 5.0kb upstream 6124 true Chr3: 23141828-23147951 Arabidopsis thaliana
AT3G62580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23141828-23146827 Arabidopsis thaliana
AT3G62580 5.0kb downstream 5.0kb downstream 6124 true Chr3: 23146828-23152951 Arabidopsis thaliana
AT3G62580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23147952-23152951 Arabidopsis thaliana
AT3G62580 10.0kb upstream 10.0kb upstream 11124 true Chr3: 23136828-23147951 Arabidopsis thaliana
AT3G62580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23136828-23146827 Arabidopsis thaliana
AT3G62580 10.0kb downstream 10.0kb downstream 11124 true Chr3: 23146828-23157951 Arabidopsis thaliana
AT3G62580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23147952-23157951 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362272 5261 Brassicaceae View MSA
123834368 5264 Brassicales-Malvales View MSA
124343497 5266 SBM View MSA
124238242 5268 Malvidae View MSA
124065364 5270 Rosid View MSA
123740028 5271 Pentapetalae View MSA
122787997 5272 Eudicot View MSA
122045721 5273 Angiosperm View MSA
121349691 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.439     High Low
cufflinks 60.532     High  
cufflinks 57.451     High  
cufflinks 60.567     High  
cufflinks 67.848     High High
cufflinks 58.36     High  

0 Strain