Gene : AT4G01880 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.225 - tRNA:m(4)X modification enzyme Genomic Order:  217
Name:  ? AT4G01880 Secondary Identifier:  ? PAC:19647206
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01880 0.5kb upstream 0.5kb upstream 2727 true Chr4: 810699-813425 Arabidopsis thaliana
AT4G01880 0.5kb upstream 0.5kb upstream 500 false Chr4: 812926-813425 Arabidopsis thaliana
AT4G01880 0.5kb downstream 0.5kb downstream 2727 true Chr4: 810199-812925 Arabidopsis thaliana
AT4G01880 0.5kb downstream 0.5kb downstream 500 false Chr4: 810199-810698 Arabidopsis thaliana
AT4G01880 1.0kb upstream 1.0kb upstream 3227 true Chr4: 810699-813925 Arabidopsis thaliana
AT4G01880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 812926-813925 Arabidopsis thaliana
AT4G01880 1.0kb downstream 1.0kb downstream 3227 true Chr4: 809699-812925 Arabidopsis thaliana
AT4G01880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 809699-810698 Arabidopsis thaliana
AT4G01880 2.0kb upstream 2.0kb upstream 4227 true Chr4: 810699-814925 Arabidopsis thaliana
AT4G01880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 812926-814925 Arabidopsis thaliana
AT4G01880 2.0kb downstream 2.0kb downstream 4227 true Chr4: 808699-812925 Arabidopsis thaliana
AT4G01880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 808699-810698 Arabidopsis thaliana
AT4G01880 5.0kb upstream 5.0kb upstream 7227 true Chr4: 810699-817925 Arabidopsis thaliana
AT4G01880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 812926-817925 Arabidopsis thaliana
AT4G01880 5.0kb downstream 5.0kb downstream 7227 true Chr4: 805699-812925 Arabidopsis thaliana
AT4G01880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 805699-810698 Arabidopsis thaliana
AT4G01880 10.0kb upstream 10.0kb upstream 12227 true Chr4: 810699-822925 Arabidopsis thaliana
AT4G01880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 812926-822925 Arabidopsis thaliana
AT4G01880 10.0kb downstream 10.0kb downstream 12227 true Chr4: 800699-812925 Arabidopsis thaliana
AT4G01880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 800699-810698 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366038 5261 Brassicaceae View MSA
123828827 5264 Brassicales-Malvales View MSA
124336653 5266 SBM View MSA
124240790 5268 Malvidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.964       High
cufflinks 4.782       Low
cufflinks 6.013       High
cufflinks 5.317        
cufflinks 5.23        
cufflinks 5.047        

0 Strain