Gene : AGY1 A. thaliana TAIR10
Primary Identifier:  ? AT4G01800 Defline:  (1 of 1) PTHR30612//PTHR30612:SF4 - SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM // SUBFAMILY NOT NAMED
Genomic Order:  209 Name:  ? AT4G01800
Secondary Identifier:  ? PAC:19647389
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01800 0.5kb upstream 0.5kb upstream 6039 true Chr4: 770722-776760 Arabidopsis thaliana
AT4G01800 0.5kb upstream 0.5kb upstream 500 false Chr4: 776261-776760 Arabidopsis thaliana
AT4G01800 0.5kb downstream 0.5kb downstream 6039 true Chr4: 770222-776260 Arabidopsis thaliana
AT4G01800 0.5kb downstream 0.5kb downstream 500 false Chr4: 770222-770721 Arabidopsis thaliana
AT4G01800 1.0kb upstream 1.0kb upstream 6539 true Chr4: 770722-777260 Arabidopsis thaliana
AT4G01800 1.0kb upstream 1.0kb upstream 1000 false Chr4: 776261-777260 Arabidopsis thaliana
AT4G01800 1.0kb downstream 1.0kb downstream 6539 true Chr4: 769722-776260 Arabidopsis thaliana
AT4G01800 1.0kb downstream 1.0kb downstream 1000 false Chr4: 769722-770721 Arabidopsis thaliana
AT4G01800 2.0kb upstream 2.0kb upstream 7539 true Chr4: 770722-778260 Arabidopsis thaliana
AT4G01800 2.0kb upstream 2.0kb upstream 2000 false Chr4: 776261-778260 Arabidopsis thaliana
AT4G01800 2.0kb downstream 2.0kb downstream 7539 true Chr4: 768722-776260 Arabidopsis thaliana
AT4G01800 2.0kb downstream 2.0kb downstream 2000 false Chr4: 768722-770721 Arabidopsis thaliana
AT4G01800 5.0kb upstream 5.0kb upstream 10539 true Chr4: 770722-781260 Arabidopsis thaliana
AT4G01800 5.0kb upstream 5.0kb upstream 5000 false Chr4: 776261-781260 Arabidopsis thaliana
AT4G01800 5.0kb downstream 5.0kb downstream 10539 true Chr4: 765722-776260 Arabidopsis thaliana
AT4G01800 5.0kb downstream 5.0kb downstream 5000 false Chr4: 765722-770721 Arabidopsis thaliana
AT4G01800 10.0kb upstream 10.0kb upstream 15539 true Chr4: 770722-786260 Arabidopsis thaliana
AT4G01800 10.0kb upstream 10.0kb upstream 10000 false Chr4: 776261-786260 Arabidopsis thaliana
AT4G01800 10.0kb downstream 10.0kb downstream 15539 true Chr4: 760722-776260 Arabidopsis thaliana
AT4G01800 10.0kb downstream 10.0kb downstream 10000 false Chr4: 760722-770721 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375114 5261 Brassicaceae View MSA
123832333 5264 Brassicales-Malvales View MSA
124345848 5266 SBM View MSA
124242672 5268 Malvidae View MSA
124067492 5270 Rosid View MSA
123740591 5271 Pentapetalae View MSA
122790576 5272 Eudicot View MSA
122047276 5273 Angiosperm View MSA
121346470 5274 Embryophyte View MSA
123428614 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.312        
cufflinks 3.15        
cufflinks 24.704        
cufflinks 3.364        
cufflinks 22.46        
cufflinks 2.199       Low

0 Strain