Gene : AT4G01780 A. thaliana TAIR10
Defline:  (1 of 4) PTHR21596//PTHR21596:SF25 - RIBONUCLEASE P SUBUNIT P38 // TRANSCRIPTION REGULATOR-LIKE-RELATED Genomic Order:  207
Name:  ? AT4G01780 Secondary Identifier:  ? PAC:19645628
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01780 0.5kb upstream 0.5kb upstream 2437 true Chr4: 766810-769246 Arabidopsis thaliana
AT4G01780 0.5kb upstream 0.5kb upstream 500 false Chr4: 766810-767309 Arabidopsis thaliana
AT4G01780 0.5kb downstream 0.5kb downstream 2437 true Chr4: 767310-769746 Arabidopsis thaliana
AT4G01780 0.5kb downstream 0.5kb downstream 500 false Chr4: 769247-769746 Arabidopsis thaliana
AT4G01780 1.0kb upstream 1.0kb upstream 2937 true Chr4: 766310-769246 Arabidopsis thaliana
AT4G01780 1.0kb upstream 1.0kb upstream 1000 false Chr4: 766310-767309 Arabidopsis thaliana
AT4G01780 1.0kb downstream 1.0kb downstream 2937 true Chr4: 767310-770246 Arabidopsis thaliana
AT4G01780 1.0kb downstream 1.0kb downstream 1000 false Chr4: 769247-770246 Arabidopsis thaliana
AT4G01780 2.0kb upstream 2.0kb upstream 3937 true Chr4: 765310-769246 Arabidopsis thaliana
AT4G01780 2.0kb upstream 2.0kb upstream 2000 false Chr4: 765310-767309 Arabidopsis thaliana
AT4G01780 2.0kb downstream 2.0kb downstream 3937 true Chr4: 767310-771246 Arabidopsis thaliana
AT4G01780 2.0kb downstream 2.0kb downstream 2000 false Chr4: 769247-771246 Arabidopsis thaliana
AT4G01780 5.0kb upstream 5.0kb upstream 6937 true Chr4: 762310-769246 Arabidopsis thaliana
AT4G01780 5.0kb upstream 5.0kb upstream 5000 false Chr4: 762310-767309 Arabidopsis thaliana
AT4G01780 5.0kb downstream 5.0kb downstream 6937 true Chr4: 767310-774246 Arabidopsis thaliana
AT4G01780 5.0kb downstream 5.0kb downstream 5000 false Chr4: 769247-774246 Arabidopsis thaliana
AT4G01780 10.0kb upstream 10.0kb upstream 11937 true Chr4: 757310-769246 Arabidopsis thaliana
AT4G01780 10.0kb upstream 10.0kb upstream 10000 false Chr4: 757310-767309 Arabidopsis thaliana
AT4G01780 10.0kb downstream 10.0kb downstream 11937 true Chr4: 767310-779246 Arabidopsis thaliana
AT4G01780 10.0kb downstream 10.0kb downstream 10000 false Chr4: 769247-779246 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494751 5273 Angiosperm Singleton cluster - no MSA
122330528 5261 Brassicaceae Singleton cluster - no MSA
123771765 5264 Brassicales-Malvales Singleton cluster - no MSA
124270291 5266 SBM Singleton cluster - no MSA
124126376 5268 Malvidae Singleton cluster - no MSA
123855292 5270 Rosid Singleton cluster - no MSA
123441279 5271 Pentapetalae Singleton cluster - no MSA
122476864 5272 Eudicot Singleton cluster - no MSA
120768120 5274 Embryophyte Singleton cluster - no MSA
122810510 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.093     Low  
cufflinks 0.25     Low High
cufflinks 0.111     Low  
cufflinks 0.092     Low  
cufflinks 0.051     Low Low
cufflinks 0.155     Low  

0 Strain