Gene : AT4G01020 A. thaliana TAIR10
Defline:  (1 of 2) PTHR18934//PTHR18934:SF140 - ATP-DEPENDENT RNA HELICASE // HELICASE , IBR AND ZINC FINGER PROTEIN DOMAIN-CONTAINING PROTEIN Genomic Order:  122
Name:  ? AT4G01020 Secondary Identifier:  ? PAC:19646375
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01020 0.5kb upstream 0.5kb upstream 6583 true Chr4: 438586-445168 Arabidopsis thaliana
AT4G01020 0.5kb upstream 0.5kb upstream 500 false Chr4: 438586-439085 Arabidopsis thaliana
AT4G01020 0.5kb downstream 0.5kb downstream 6583 true Chr4: 439086-445668 Arabidopsis thaliana
AT4G01020 0.5kb downstream 0.5kb downstream 500 false Chr4: 445169-445668 Arabidopsis thaliana
AT4G01020 1.0kb upstream 1.0kb upstream 7083 true Chr4: 438086-445168 Arabidopsis thaliana
AT4G01020 1.0kb upstream 1.0kb upstream 1000 false Chr4: 438086-439085 Arabidopsis thaliana
AT4G01020 1.0kb downstream 1.0kb downstream 7083 true Chr4: 439086-446168 Arabidopsis thaliana
AT4G01020 1.0kb downstream 1.0kb downstream 1000 false Chr4: 445169-446168 Arabidopsis thaliana
AT4G01020 2.0kb upstream 2.0kb upstream 8083 true Chr4: 437086-445168 Arabidopsis thaliana
AT4G01020 2.0kb upstream 2.0kb upstream 2000 false Chr4: 437086-439085 Arabidopsis thaliana
AT4G01020 2.0kb downstream 2.0kb downstream 8083 true Chr4: 439086-447168 Arabidopsis thaliana
AT4G01020 2.0kb downstream 2.0kb downstream 2000 false Chr4: 445169-447168 Arabidopsis thaliana
AT4G01020 5.0kb upstream 5.0kb upstream 11083 true Chr4: 434086-445168 Arabidopsis thaliana
AT4G01020 5.0kb upstream 5.0kb upstream 5000 false Chr4: 434086-439085 Arabidopsis thaliana
AT4G01020 5.0kb downstream 5.0kb downstream 11083 true Chr4: 439086-450168 Arabidopsis thaliana
AT4G01020 5.0kb downstream 5.0kb downstream 5000 false Chr4: 445169-450168 Arabidopsis thaliana
AT4G01020 10.0kb upstream 10.0kb upstream 16083 true Chr4: 429086-445168 Arabidopsis thaliana
AT4G01020 10.0kb upstream 10.0kb upstream 10000 false Chr4: 429086-439085 Arabidopsis thaliana
AT4G01020 10.0kb downstream 10.0kb downstream 16083 true Chr4: 439086-455168 Arabidopsis thaliana
AT4G01020 10.0kb downstream 10.0kb downstream 10000 false Chr4: 445169-455168 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372212 5261 Brassicaceae View MSA
123830343 5264 Brassicales-Malvales View MSA
124339846 5266 SBM View MSA
124241686 5268 Malvidae View MSA
124065250 5270 Rosid View MSA
123737649 5271 Pentapetalae View MSA
122792677 5272 Eudicot View MSA
122041869 5273 Angiosperm View MSA
121309896 5274 Embryophyte View MSA
123347530 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.051        
cufflinks 6.128       High
cufflinks 3.321       Low
cufflinks 5.832        
cufflinks 3.531        
cufflinks 5.074        

0 Strain