Gene : AT4G01000 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12786//PTHR12786:SF1 - SPLICING FACTOR SF3A-RELATED // PROTEIN SDE2 HOMOLOG Genomic Order:  120
Name:  ? AT4G01000 Secondary Identifier:  ? PAC:19645390
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01000 0.5kb upstream 0.5kb upstream 2387 true Chr4: 431963-434349 Arabidopsis thaliana
AT4G01000 0.5kb upstream 0.5kb upstream 500 false Chr4: 433850-434349 Arabidopsis thaliana
AT4G01000 0.5kb downstream 0.5kb downstream 2387 true Chr4: 431463-433849 Arabidopsis thaliana
AT4G01000 0.5kb downstream 0.5kb downstream 500 false Chr4: 431463-431962 Arabidopsis thaliana
AT4G01000 1.0kb upstream 1.0kb upstream 2887 true Chr4: 431963-434849 Arabidopsis thaliana
AT4G01000 1.0kb upstream 1.0kb upstream 1000 false Chr4: 433850-434849 Arabidopsis thaliana
AT4G01000 1.0kb downstream 1.0kb downstream 2887 true Chr4: 430963-433849 Arabidopsis thaliana
AT4G01000 1.0kb downstream 1.0kb downstream 1000 false Chr4: 430963-431962 Arabidopsis thaliana
AT4G01000 2.0kb upstream 2.0kb upstream 3887 true Chr4: 431963-435849 Arabidopsis thaliana
AT4G01000 2.0kb upstream 2.0kb upstream 2000 false Chr4: 433850-435849 Arabidopsis thaliana
AT4G01000 2.0kb downstream 2.0kb downstream 3887 true Chr4: 429963-433849 Arabidopsis thaliana
AT4G01000 2.0kb downstream 2.0kb downstream 2000 false Chr4: 429963-431962 Arabidopsis thaliana
AT4G01000 5.0kb upstream 5.0kb upstream 6887 true Chr4: 431963-438849 Arabidopsis thaliana
AT4G01000 5.0kb upstream 5.0kb upstream 5000 false Chr4: 433850-438849 Arabidopsis thaliana
AT4G01000 5.0kb downstream 5.0kb downstream 6887 true Chr4: 426963-433849 Arabidopsis thaliana
AT4G01000 5.0kb downstream 5.0kb downstream 5000 false Chr4: 426963-431962 Arabidopsis thaliana
AT4G01000 10.0kb upstream 10.0kb upstream 11887 true Chr4: 431963-443849 Arabidopsis thaliana
AT4G01000 10.0kb upstream 10.0kb upstream 10000 false Chr4: 433850-443849 Arabidopsis thaliana
AT4G01000 10.0kb downstream 10.0kb downstream 11887 true Chr4: 421963-433849 Arabidopsis thaliana
AT4G01000 10.0kb downstream 10.0kb downstream 10000 false Chr4: 421963-431962 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366035 5261 Brassicaceae View MSA
123839812 5264 Brassicales-Malvales View MSA
124341955 5266 SBM View MSA
124240359 5268 Malvidae View MSA
124060916 5270 Rosid View MSA
123743945 5271 Pentapetalae View MSA
122790858 5272 Eudicot View MSA
122047648 5273 Angiosperm View MSA
121345169 5274 Embryophyte View MSA
123427367 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.408     High  
cufflinks 60.41     High  
cufflinks 58.749     High  
cufflinks 64.211     High  
cufflinks 67.668     High High
cufflinks 49.281     High Low

0 Strain