Gene : AT4G01040 A. thaliana TAIR10
Defline:  (1 of 1) K17525 - chitinase domain-containing protein 1 (CHID1) Genomic Order:  127
Name:  ? AT4G01040 Secondary Identifier:  ? PAC:19645819
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01040 0.5kb upstream 0.5kb upstream 2680 true Chr4: 452869-455548 Arabidopsis thaliana
AT4G01040 0.5kb upstream 0.5kb upstream 500 false Chr4: 452869-453368 Arabidopsis thaliana
AT4G01040 0.5kb downstream 0.5kb downstream 2680 true Chr4: 453369-456048 Arabidopsis thaliana
AT4G01040 0.5kb downstream 0.5kb downstream 500 false Chr4: 455549-456048 Arabidopsis thaliana
AT4G01040 1.0kb upstream 1.0kb upstream 3180 true Chr4: 452369-455548 Arabidopsis thaliana
AT4G01040 1.0kb upstream 1.0kb upstream 1000 false Chr4: 452369-453368 Arabidopsis thaliana
AT4G01040 1.0kb downstream 1.0kb downstream 3180 true Chr4: 453369-456548 Arabidopsis thaliana
AT4G01040 1.0kb downstream 1.0kb downstream 1000 false Chr4: 455549-456548 Arabidopsis thaliana
AT4G01040 2.0kb upstream 2.0kb upstream 4180 true Chr4: 451369-455548 Arabidopsis thaliana
AT4G01040 2.0kb upstream 2.0kb upstream 2000 false Chr4: 451369-453368 Arabidopsis thaliana
AT4G01040 2.0kb downstream 2.0kb downstream 4180 true Chr4: 453369-457548 Arabidopsis thaliana
AT4G01040 2.0kb downstream 2.0kb downstream 2000 false Chr4: 455549-457548 Arabidopsis thaliana
AT4G01040 5.0kb upstream 5.0kb upstream 7180 true Chr4: 448369-455548 Arabidopsis thaliana
AT4G01040 5.0kb upstream 5.0kb upstream 5000 false Chr4: 448369-453368 Arabidopsis thaliana
AT4G01040 5.0kb downstream 5.0kb downstream 7180 true Chr4: 453369-460548 Arabidopsis thaliana
AT4G01040 5.0kb downstream 5.0kb downstream 5000 false Chr4: 455549-460548 Arabidopsis thaliana
AT4G01040 10.0kb upstream 10.0kb upstream 12180 true Chr4: 443369-455548 Arabidopsis thaliana
AT4G01040 10.0kb upstream 10.0kb upstream 10000 false Chr4: 443369-453368 Arabidopsis thaliana
AT4G01040 10.0kb downstream 10.0kb downstream 12180 true Chr4: 453369-465548 Arabidopsis thaliana
AT4G01040 10.0kb downstream 10.0kb downstream 10000 false Chr4: 455549-465548 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026747 5273 Angiosperm View MSA
122378560 5261 Brassicaceae View MSA
123836870 5264 Brassicales-Malvales View MSA
124346859 5266 SBM View MSA
124246146 5268 Malvidae View MSA
124069459 5270 Rosid View MSA
123741965 5271 Pentapetalae View MSA
122793996 5272 Eudicot View MSA
121348650 5274 Embryophyte View MSA
123425865 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.742       High
cufflinks 9.715       Low
cufflinks 10.635        
cufflinks 10.356        
cufflinks 11.055        
cufflinks 10.749        

0 Strain