Gene : AT4G01030 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  125
Name:  ? AT4G01030 Secondary Identifier:  ? PAC:19645473
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01030 0.5kb upstream 0.5kb upstream 3202 true Chr4: 447941-451142 Arabidopsis thaliana
AT4G01030 0.5kb upstream 0.5kb upstream 500 false Chr4: 450643-451142 Arabidopsis thaliana
AT4G01030 0.5kb downstream 0.5kb downstream 3202 true Chr4: 447441-450642 Arabidopsis thaliana
AT4G01030 0.5kb downstream 0.5kb downstream 500 false Chr4: 447441-447940 Arabidopsis thaliana
AT4G01030 1.0kb upstream 1.0kb upstream 3702 true Chr4: 447941-451642 Arabidopsis thaliana
AT4G01030 1.0kb upstream 1.0kb upstream 1000 false Chr4: 450643-451642 Arabidopsis thaliana
AT4G01030 1.0kb downstream 1.0kb downstream 3702 true Chr4: 446941-450642 Arabidopsis thaliana
AT4G01030 1.0kb downstream 1.0kb downstream 1000 false Chr4: 446941-447940 Arabidopsis thaliana
AT4G01030 2.0kb upstream 2.0kb upstream 4702 true Chr4: 447941-452642 Arabidopsis thaliana
AT4G01030 2.0kb upstream 2.0kb upstream 2000 false Chr4: 450643-452642 Arabidopsis thaliana
AT4G01030 2.0kb downstream 2.0kb downstream 4702 true Chr4: 445941-450642 Arabidopsis thaliana
AT4G01030 2.0kb downstream 2.0kb downstream 2000 false Chr4: 445941-447940 Arabidopsis thaliana
AT4G01030 5.0kb upstream 5.0kb upstream 7702 true Chr4: 447941-455642 Arabidopsis thaliana
AT4G01030 5.0kb upstream 5.0kb upstream 5000 false Chr4: 450643-455642 Arabidopsis thaliana
AT4G01030 5.0kb downstream 5.0kb downstream 7702 true Chr4: 442941-450642 Arabidopsis thaliana
AT4G01030 5.0kb downstream 5.0kb downstream 5000 false Chr4: 442941-447940 Arabidopsis thaliana
AT4G01030 10.0kb upstream 10.0kb upstream 12702 true Chr4: 447941-460642 Arabidopsis thaliana
AT4G01030 10.0kb upstream 10.0kb upstream 10000 false Chr4: 450643-460642 Arabidopsis thaliana
AT4G01030 10.0kb downstream 10.0kb downstream 12702 true Chr4: 437941-450642 Arabidopsis thaliana
AT4G01030 10.0kb downstream 10.0kb downstream 10000 false Chr4: 437941-447940 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330512 5261 Brassicaceae Singleton cluster - no MSA
123836925 5264 Brassicales-Malvales View MSA
124322225 5266 SBM View MSA
124252627 5268 Malvidae View MSA
124064804 5270 Rosid View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.218       High
cufflinks 0.685        
cufflinks 1.409        
cufflinks 0.781        
cufflinks 1.198        
cufflinks 0.483       Low

0 Strain