Gene : AT4G00560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10491:SF7 - NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN Genomic Order:  68
Name:  ? AT4G00560 Secondary Identifier:  ? PAC:19648080
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ETHYL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5041 Arabidopsis thaliana pathologic  
Athaliana PWY-7270 Arabidopsis thaliana pathologic  
Athaliana PWY-7528 Arabidopsis thaliana pathologic  
Athaliana SAM-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G00560 0.5kb upstream 0.5kb upstream 2220 true Chr4: 240660-242879 Arabidopsis thaliana
AT4G00560 0.5kb upstream 0.5kb upstream 500 false Chr4: 242380-242879 Arabidopsis thaliana
AT4G00560 0.5kb downstream 0.5kb downstream 2220 true Chr4: 240160-242379 Arabidopsis thaliana
AT4G00560 0.5kb downstream 0.5kb downstream 500 false Chr4: 240160-240659 Arabidopsis thaliana
AT4G00560 1.0kb upstream 1.0kb upstream 2720 true Chr4: 240660-243379 Arabidopsis thaliana
AT4G00560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 242380-243379 Arabidopsis thaliana
AT4G00560 1.0kb downstream 1.0kb downstream 2720 true Chr4: 239660-242379 Arabidopsis thaliana
AT4G00560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 239660-240659 Arabidopsis thaliana
AT4G00560 2.0kb upstream 2.0kb upstream 3720 true Chr4: 240660-244379 Arabidopsis thaliana
AT4G00560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 242380-244379 Arabidopsis thaliana
AT4G00560 2.0kb downstream 2.0kb downstream 3720 true Chr4: 238660-242379 Arabidopsis thaliana
AT4G00560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 238660-240659 Arabidopsis thaliana
AT4G00560 5.0kb upstream 5.0kb upstream 6720 true Chr4: 240660-247379 Arabidopsis thaliana
AT4G00560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 242380-247379 Arabidopsis thaliana
AT4G00560 5.0kb downstream 5.0kb downstream 6720 true Chr4: 235660-242379 Arabidopsis thaliana
AT4G00560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 235660-240659 Arabidopsis thaliana
AT4G00560 10.0kb upstream 10.0kb upstream 11720 true Chr4: 240660-252379 Arabidopsis thaliana
AT4G00560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 242380-252379 Arabidopsis thaliana
AT4G00560 10.0kb downstream 10.0kb downstream 11720 true Chr4: 230660-242379 Arabidopsis thaliana
AT4G00560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 230660-240659 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373265 5261 Brassicaceae View MSA
123833363 5264 Brassicales-Malvales View MSA
124345444 5266 SBM View MSA
124242488 5268 Malvidae View MSA
124068376 5270 Rosid View MSA
123738972 5271 Pentapetalae View MSA
122787583 5272 Eudicot View MSA
122046148 5273 Angiosperm View MSA
121346812 5274 Embryophyte View MSA
123424817 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.87       Low
cufflinks 5.304       High
cufflinks 3.431        
cufflinks 5.055        
cufflinks 3.523        
cufflinks 4.86        

0 Strain