Gene : TPC1 A. thaliana TAIR10
Primary Identifier:  ? AT4G03560 Defline:  (1 of 1) K16900 - two pore calcium channel protein, plant (TPC1, CCH1)
Genomic Order:  412 Name:  ? AT4G03560
Secondary Identifier:  ? PAC:19646844
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G03560 0.5kb upstream 0.5kb upstream 6411 true Chr4: 1579556-1585966 Arabidopsis thaliana
AT4G03560 0.5kb upstream 0.5kb upstream 500 false Chr4: 1579556-1580055 Arabidopsis thaliana
AT4G03560 0.5kb downstream 0.5kb downstream 6411 true Chr4: 1580056-1586466 Arabidopsis thaliana
AT4G03560 0.5kb downstream 0.5kb downstream 500 false Chr4: 1585967-1586466 Arabidopsis thaliana
AT4G03560 1.0kb upstream 1.0kb upstream 6911 true Chr4: 1579056-1585966 Arabidopsis thaliana
AT4G03560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1579056-1580055 Arabidopsis thaliana
AT4G03560 1.0kb downstream 1.0kb downstream 6911 true Chr4: 1580056-1586966 Arabidopsis thaliana
AT4G03560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1585967-1586966 Arabidopsis thaliana
AT4G03560 2.0kb upstream 2.0kb upstream 7911 true Chr4: 1578056-1585966 Arabidopsis thaliana
AT4G03560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1578056-1580055 Arabidopsis thaliana
AT4G03560 2.0kb downstream 2.0kb downstream 7911 true Chr4: 1580056-1587966 Arabidopsis thaliana
AT4G03560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1585967-1587966 Arabidopsis thaliana
AT4G03560 5.0kb upstream 5.0kb upstream 10911 true Chr4: 1575056-1585966 Arabidopsis thaliana
AT4G03560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1575056-1580055 Arabidopsis thaliana
AT4G03560 5.0kb downstream 5.0kb downstream 10911 true Chr4: 1580056-1590966 Arabidopsis thaliana
AT4G03560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1585967-1590966 Arabidopsis thaliana
AT4G03560 10.0kb upstream 10.0kb upstream 15911 true Chr4: 1570056-1585966 Arabidopsis thaliana
AT4G03560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1570056-1580055 Arabidopsis thaliana
AT4G03560 10.0kb downstream 10.0kb downstream 15911 true Chr4: 1580056-1595966 Arabidopsis thaliana
AT4G03560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1585967-1595966 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363476 5261 Brassicaceae View MSA
123832575 5264 Brassicales-Malvales View MSA
124338619 5266 SBM View MSA
124238388 5268 Malvidae View MSA
124050278 5270 Rosid View MSA
123736366 5271 Pentapetalae View MSA
122789852 5272 Eudicot View MSA
122042673 5273 Angiosperm View MSA
121347876 5274 Embryophyte View MSA
123380661 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.388     High High
cufflinks 25.491       Low
cufflinks 29.876     High  
cufflinks 26.761        
cufflinks 31.835     High High
cufflinks 26.252        

0 Strain