Gene : AT4G03180 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15657:SF1 - THYROID TRANSCRIPTION FACTOR 1-ASSOCIATED PROTEIN 26 Genomic Order:  371
Name:  ? AT4G03180 Secondary Identifier:  ? PAC:19644590
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G03180 0.5kb upstream 0.5kb upstream 2321 true Chr4: 1402617-1404937 Arabidopsis thaliana
AT4G03180 0.5kb upstream 0.5kb upstream 500 false Chr4: 1402617-1403116 Arabidopsis thaliana
AT4G03180 0.5kb downstream 0.5kb downstream 2321 true Chr4: 1403117-1405437 Arabidopsis thaliana
AT4G03180 0.5kb downstream 0.5kb downstream 500 false Chr4: 1404938-1405437 Arabidopsis thaliana
AT4G03180 1.0kb upstream 1.0kb upstream 2821 true Chr4: 1402117-1404937 Arabidopsis thaliana
AT4G03180 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1402117-1403116 Arabidopsis thaliana
AT4G03180 1.0kb downstream 1.0kb downstream 2821 true Chr4: 1403117-1405937 Arabidopsis thaliana
AT4G03180 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1404938-1405937 Arabidopsis thaliana
AT4G03180 2.0kb upstream 2.0kb upstream 3821 true Chr4: 1401117-1404937 Arabidopsis thaliana
AT4G03180 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1401117-1403116 Arabidopsis thaliana
AT4G03180 2.0kb downstream 2.0kb downstream 3821 true Chr4: 1403117-1406937 Arabidopsis thaliana
AT4G03180 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1404938-1406937 Arabidopsis thaliana
AT4G03180 5.0kb upstream 5.0kb upstream 6821 true Chr4: 1398117-1404937 Arabidopsis thaliana
AT4G03180 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1398117-1403116 Arabidopsis thaliana
AT4G03180 5.0kb downstream 5.0kb downstream 6821 true Chr4: 1403117-1409937 Arabidopsis thaliana
AT4G03180 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1404938-1409937 Arabidopsis thaliana
AT4G03180 10.0kb upstream 10.0kb upstream 11821 true Chr4: 1393117-1404937 Arabidopsis thaliana
AT4G03180 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1393117-1403116 Arabidopsis thaliana
AT4G03180 10.0kb downstream 10.0kb downstream 11821 true Chr4: 1403117-1414937 Arabidopsis thaliana
AT4G03180 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1404938-1414937 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371726 5261 Brassicaceae View MSA
123835051 5264 Brassicales-Malvales View MSA
124344375 5266 SBM View MSA
124248791 5268 Malvidae View MSA
124065929 5270 Rosid View MSA
123736421 5271 Pentapetalae View MSA
122791858 5272 Eudicot View MSA
122042448 5273 Angiosperm View MSA
121343985 5274 Embryophyte View MSA
123426667 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.869        
cufflinks 12.442        
cufflinks 7.986       Low
cufflinks 13.04        
cufflinks 7.532       Low
cufflinks 12.412        

0 Strain