Gene : ABP1 A. thaliana TAIR10
Primary Identifier:  ? AT4G02980 Defline:  (1 of 1) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1
Genomic Order:  346 Name:  ? AT4G02980
Secondary Identifier:  ? PAC:19647295
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G02980 0.5kb upstream 0.5kb upstream 2322 true Chr4: 1319656-1321977 Arabidopsis thaliana
AT4G02980 0.5kb upstream 0.5kb upstream 500 false Chr4: 1321478-1321977 Arabidopsis thaliana
AT4G02980 0.5kb downstream 0.5kb downstream 2322 true Chr4: 1319156-1321477 Arabidopsis thaliana
AT4G02980 0.5kb downstream 0.5kb downstream 500 false Chr4: 1319156-1319655 Arabidopsis thaliana
AT4G02980 1.0kb upstream 1.0kb upstream 2822 true Chr4: 1319656-1322477 Arabidopsis thaliana
AT4G02980 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1321478-1322477 Arabidopsis thaliana
AT4G02980 1.0kb downstream 1.0kb downstream 2822 true Chr4: 1318656-1321477 Arabidopsis thaliana
AT4G02980 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1318656-1319655 Arabidopsis thaliana
AT4G02980 2.0kb upstream 2.0kb upstream 3822 true Chr4: 1319656-1323477 Arabidopsis thaliana
AT4G02980 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1321478-1323477 Arabidopsis thaliana
AT4G02980 2.0kb downstream 2.0kb downstream 3822 true Chr4: 1317656-1321477 Arabidopsis thaliana
AT4G02980 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1317656-1319655 Arabidopsis thaliana
AT4G02980 5.0kb upstream 5.0kb upstream 6822 true Chr4: 1319656-1326477 Arabidopsis thaliana
AT4G02980 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1321478-1326477 Arabidopsis thaliana
AT4G02980 5.0kb downstream 5.0kb downstream 6822 true Chr4: 1314656-1321477 Arabidopsis thaliana
AT4G02980 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1314656-1319655 Arabidopsis thaliana
AT4G02980 10.0kb upstream 10.0kb upstream 11822 true Chr4: 1319656-1331477 Arabidopsis thaliana
AT4G02980 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1321478-1331477 Arabidopsis thaliana
AT4G02980 10.0kb downstream 10.0kb downstream 11822 true Chr4: 1309656-1321477 Arabidopsis thaliana
AT4G02980 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1309656-1319655 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369036 5261 Brassicaceae View MSA
123841219 5264 Brassicales-Malvales View MSA
124338693 5266 SBM View MSA
124239302 5268 Malvidae View MSA
124068564 5270 Rosid View MSA
123737576 5271 Pentapetalae View MSA
122787976 5272 Eudicot View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.172        
cufflinks 11.575        
cufflinks 7.184       Low
cufflinks 11.515        
cufflinks 7.941        
cufflinks 10.469        

0 Strain