Gene : AT4G02820 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  330
Name:  ? AT4G02820 Secondary Identifier:  ? PAC:19644497
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G02820 0.5kb upstream 0.5kb upstream 2598 true Chr4: 1258068-1260665 Arabidopsis thaliana
AT4G02820 0.5kb upstream 0.5kb upstream 500 false Chr4: 1258068-1258567 Arabidopsis thaliana
AT4G02820 0.5kb downstream 0.5kb downstream 2598 true Chr4: 1258568-1261165 Arabidopsis thaliana
AT4G02820 0.5kb downstream 0.5kb downstream 500 false Chr4: 1260666-1261165 Arabidopsis thaliana
AT4G02820 1.0kb upstream 1.0kb upstream 3098 true Chr4: 1257568-1260665 Arabidopsis thaliana
AT4G02820 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1257568-1258567 Arabidopsis thaliana
AT4G02820 1.0kb downstream 1.0kb downstream 3098 true Chr4: 1258568-1261665 Arabidopsis thaliana
AT4G02820 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1260666-1261665 Arabidopsis thaliana
AT4G02820 2.0kb upstream 2.0kb upstream 4098 true Chr4: 1256568-1260665 Arabidopsis thaliana
AT4G02820 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1256568-1258567 Arabidopsis thaliana
AT4G02820 2.0kb downstream 2.0kb downstream 4098 true Chr4: 1258568-1262665 Arabidopsis thaliana
AT4G02820 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1260666-1262665 Arabidopsis thaliana
AT4G02820 5.0kb upstream 5.0kb upstream 7098 true Chr4: 1253568-1260665 Arabidopsis thaliana
AT4G02820 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1253568-1258567 Arabidopsis thaliana
AT4G02820 5.0kb downstream 5.0kb downstream 7098 true Chr4: 1258568-1265665 Arabidopsis thaliana
AT4G02820 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1260666-1265665 Arabidopsis thaliana
AT4G02820 10.0kb upstream 10.0kb upstream 12098 true Chr4: 1248568-1260665 Arabidopsis thaliana
AT4G02820 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1248568-1258567 Arabidopsis thaliana
AT4G02820 10.0kb downstream 10.0kb downstream 12098 true Chr4: 1258568-1270665 Arabidopsis thaliana
AT4G02820 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1260666-1270665 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370210 5261 Brassicaceae View MSA
123833927 5264 Brassicales-Malvales View MSA
124339423 5266 SBM View MSA
124241200 5268 Malvidae View MSA
124062477 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.878       Low
cufflinks 7.854        
cufflinks 5.99        
cufflinks 8.494       High
cufflinks 5.148       Low
cufflinks 8.34        

0 Strain