Gene : PMS1 A. thaliana TAIR10
Primary Identifier:  ? AT4G02460 Defline:  (1 of 1) K10858 - DNA mismatch repair protein PMS2 (PMS2)
Genomic Order:  287 Name:  ? AT4G02460
Secondary Identifier:  ? PAC:19645071
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G02460 0.5kb upstream 0.5kb upstream 5087 true Chr4: 1076136-1081222 Arabidopsis thaliana
AT4G02460 0.5kb upstream 0.5kb upstream 500 false Chr4: 1080723-1081222 Arabidopsis thaliana
AT4G02460 0.5kb downstream 0.5kb downstream 5087 true Chr4: 1075636-1080722 Arabidopsis thaliana
AT4G02460 0.5kb downstream 0.5kb downstream 500 false Chr4: 1075636-1076135 Arabidopsis thaliana
AT4G02460 1.0kb upstream 1.0kb upstream 5587 true Chr4: 1076136-1081722 Arabidopsis thaliana
AT4G02460 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1080723-1081722 Arabidopsis thaliana
AT4G02460 1.0kb downstream 1.0kb downstream 5587 true Chr4: 1075136-1080722 Arabidopsis thaliana
AT4G02460 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1075136-1076135 Arabidopsis thaliana
AT4G02460 2.0kb upstream 2.0kb upstream 6587 true Chr4: 1076136-1082722 Arabidopsis thaliana
AT4G02460 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1080723-1082722 Arabidopsis thaliana
AT4G02460 2.0kb downstream 2.0kb downstream 6587 true Chr4: 1074136-1080722 Arabidopsis thaliana
AT4G02460 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1074136-1076135 Arabidopsis thaliana
AT4G02460 5.0kb upstream 5.0kb upstream 9587 true Chr4: 1076136-1085722 Arabidopsis thaliana
AT4G02460 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1080723-1085722 Arabidopsis thaliana
AT4G02460 5.0kb downstream 5.0kb downstream 9587 true Chr4: 1071136-1080722 Arabidopsis thaliana
AT4G02460 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1071136-1076135 Arabidopsis thaliana
AT4G02460 10.0kb upstream 10.0kb upstream 14587 true Chr4: 1076136-1090722 Arabidopsis thaliana
AT4G02460 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1080723-1090722 Arabidopsis thaliana
AT4G02460 10.0kb downstream 10.0kb downstream 14587 true Chr4: 1066136-1080722 Arabidopsis thaliana
AT4G02460 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1066136-1076135 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369918 5261 Brassicaceae View MSA
123837618 5264 Brassicales-Malvales View MSA
124349730 5266 SBM View MSA
124239053 5268 Malvidae View MSA
124067579 5270 Rosid View MSA
123747689 5271 Pentapetalae View MSA
122789858 5272 Eudicot View MSA
122044481 5273 Angiosperm View MSA
121344102 5274 Embryophyte View MSA
123426273 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.114        
cufflinks 3.942        
cufflinks 1.636       Low
cufflinks 3.995       High
cufflinks 1.875        
cufflinks 3.516        

0 Strain