Gene : PSBQ-2 A. thaliana TAIR10
Primary Identifier:  ? AT4G05180 Defline:  (1 of 4) K08901 - photosystem II oxygen-evolving enhancer protein 3 (psbQ)
Genomic Order:  540 Name:  ? AT4G05180
Secondary Identifier:  ? PAC:19644853
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G05180 0.5kb upstream 0.5kb upstream 1922 true Chr4: 2671822-2673743 Arabidopsis thaliana
AT4G05180 0.5kb upstream 0.5kb upstream 500 false Chr4: 2673244-2673743 Arabidopsis thaliana
AT4G05180 0.5kb downstream 0.5kb downstream 1922 true Chr4: 2671322-2673243 Arabidopsis thaliana
AT4G05180 0.5kb downstream 0.5kb downstream 500 false Chr4: 2671322-2671821 Arabidopsis thaliana
AT4G05180 1.0kb upstream 1.0kb upstream 2422 true Chr4: 2671822-2674243 Arabidopsis thaliana
AT4G05180 1.0kb upstream 1.0kb upstream 1000 false Chr4: 2673244-2674243 Arabidopsis thaliana
AT4G05180 1.0kb downstream 1.0kb downstream 2422 true Chr4: 2670822-2673243 Arabidopsis thaliana
AT4G05180 1.0kb downstream 1.0kb downstream 1000 false Chr4: 2670822-2671821 Arabidopsis thaliana
AT4G05180 2.0kb upstream 2.0kb upstream 3422 true Chr4: 2671822-2675243 Arabidopsis thaliana
AT4G05180 2.0kb upstream 2.0kb upstream 2000 false Chr4: 2673244-2675243 Arabidopsis thaliana
AT4G05180 2.0kb downstream 2.0kb downstream 3422 true Chr4: 2669822-2673243 Arabidopsis thaliana
AT4G05180 2.0kb downstream 2.0kb downstream 2000 false Chr4: 2669822-2671821 Arabidopsis thaliana
AT4G05180 5.0kb upstream 5.0kb upstream 6422 true Chr4: 2671822-2678243 Arabidopsis thaliana
AT4G05180 5.0kb upstream 5.0kb upstream 5000 false Chr4: 2673244-2678243 Arabidopsis thaliana
AT4G05180 5.0kb downstream 5.0kb downstream 6422 true Chr4: 2666822-2673243 Arabidopsis thaliana
AT4G05180 5.0kb downstream 5.0kb downstream 5000 false Chr4: 2666822-2671821 Arabidopsis thaliana
AT4G05180 10.0kb upstream 10.0kb upstream 11422 true Chr4: 2671822-2683243 Arabidopsis thaliana
AT4G05180 10.0kb upstream 10.0kb upstream 10000 false Chr4: 2673244-2683243 Arabidopsis thaliana
AT4G05180 10.0kb downstream 10.0kb downstream 11422 true Chr4: 2661822-2673243 Arabidopsis thaliana
AT4G05180 10.0kb downstream 10.0kb downstream 10000 false Chr4: 2661822-2671821 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363220 5261 Brassicaceae View MSA
123838600 5264 Brassicales-Malvales View MSA
124342527 5266 SBM View MSA
124238022 5268 Malvidae View MSA
124068035 5270 Rosid View MSA
123737093 5271 Pentapetalae View MSA
122790173 5272 Eudicot View MSA
122043772 5273 Angiosperm View MSA
121344186 5274 Embryophyte View MSA
123427004 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1110.919     High  
cufflinks 3.073        
cufflinks 1538.287     High  
cufflinks 4.759        
cufflinks 1560.619     High  
cufflinks 2.078       Low

0 Strain