Gene : AT4G04790 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  490
Name:  ? AT4G04790 Secondary Identifier:  ? PAC:19644768
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G04790 0.5kb upstream 0.5kb upstream 4997 true Chr4: 2434907-2439903 Arabidopsis thaliana
AT4G04790 0.5kb upstream 0.5kb upstream 500 false Chr4: 2439404-2439903 Arabidopsis thaliana
AT4G04790 0.5kb downstream 0.5kb downstream 4997 true Chr4: 2434407-2439403 Arabidopsis thaliana
AT4G04790 0.5kb downstream 0.5kb downstream 500 false Chr4: 2434407-2434906 Arabidopsis thaliana
AT4G04790 1.0kb upstream 1.0kb upstream 5497 true Chr4: 2434907-2440403 Arabidopsis thaliana
AT4G04790 1.0kb upstream 1.0kb upstream 1000 false Chr4: 2439404-2440403 Arabidopsis thaliana
AT4G04790 1.0kb downstream 1.0kb downstream 5497 true Chr4: 2433907-2439403 Arabidopsis thaliana
AT4G04790 1.0kb downstream 1.0kb downstream 1000 false Chr4: 2433907-2434906 Arabidopsis thaliana
AT4G04790 2.0kb upstream 2.0kb upstream 6497 true Chr4: 2434907-2441403 Arabidopsis thaliana
AT4G04790 2.0kb upstream 2.0kb upstream 2000 false Chr4: 2439404-2441403 Arabidopsis thaliana
AT4G04790 2.0kb downstream 2.0kb downstream 6497 true Chr4: 2432907-2439403 Arabidopsis thaliana
AT4G04790 2.0kb downstream 2.0kb downstream 2000 false Chr4: 2432907-2434906 Arabidopsis thaliana
AT4G04790 5.0kb upstream 5.0kb upstream 9497 true Chr4: 2434907-2444403 Arabidopsis thaliana
AT4G04790 5.0kb upstream 5.0kb upstream 5000 false Chr4: 2439404-2444403 Arabidopsis thaliana
AT4G04790 5.0kb downstream 5.0kb downstream 9497 true Chr4: 2429907-2439403 Arabidopsis thaliana
AT4G04790 5.0kb downstream 5.0kb downstream 5000 false Chr4: 2429907-2434906 Arabidopsis thaliana
AT4G04790 10.0kb upstream 10.0kb upstream 14497 true Chr4: 2434907-2449403 Arabidopsis thaliana
AT4G04790 10.0kb upstream 10.0kb upstream 10000 false Chr4: 2439404-2449403 Arabidopsis thaliana
AT4G04790 10.0kb downstream 10.0kb downstream 14497 true Chr4: 2424907-2439403 Arabidopsis thaliana
AT4G04790 10.0kb downstream 10.0kb downstream 10000 false Chr4: 2424907-2434906 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363834 5261 Brassicaceae View MSA
123836136 5264 Brassicales-Malvales View MSA
124322135 5266 SBM View MSA
124239590 5268 Malvidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.75        
cufflinks 1.911        
cufflinks 1.145        
cufflinks 1.624        
cufflinks 0.908       Low
cufflinks 2.161       High

0 Strain