Gene : AT4G04200 A. thaliana TAIR10
Defline:  (1 of 2) K12947 - signal peptidase complex subunit 2 (SPCS2, SPC2) Genomic Order:  444
Name:  ? AT4G04200 Secondary Identifier:  ? PAC:19648816
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G04200 0.5kb upstream 0.5kb upstream 2314 true Chr4: 2026665-2028978 Arabidopsis thaliana
AT4G04200 0.5kb upstream 0.5kb upstream 500 false Chr4: 2026665-2027164 Arabidopsis thaliana
AT4G04200 0.5kb downstream 0.5kb downstream 2314 true Chr4: 2027165-2029478 Arabidopsis thaliana
AT4G04200 0.5kb downstream 0.5kb downstream 500 false Chr4: 2028979-2029478 Arabidopsis thaliana
AT4G04200 1.0kb upstream 1.0kb upstream 2814 true Chr4: 2026165-2028978 Arabidopsis thaliana
AT4G04200 1.0kb upstream 1.0kb upstream 1000 false Chr4: 2026165-2027164 Arabidopsis thaliana
AT4G04200 1.0kb downstream 1.0kb downstream 2814 true Chr4: 2027165-2029978 Arabidopsis thaliana
AT4G04200 1.0kb downstream 1.0kb downstream 1000 false Chr4: 2028979-2029978 Arabidopsis thaliana
AT4G04200 2.0kb upstream 2.0kb upstream 3814 true Chr4: 2025165-2028978 Arabidopsis thaliana
AT4G04200 2.0kb upstream 2.0kb upstream 2000 false Chr4: 2025165-2027164 Arabidopsis thaliana
AT4G04200 2.0kb downstream 2.0kb downstream 3814 true Chr4: 2027165-2030978 Arabidopsis thaliana
AT4G04200 2.0kb downstream 2.0kb downstream 2000 false Chr4: 2028979-2030978 Arabidopsis thaliana
AT4G04200 5.0kb upstream 5.0kb upstream 6814 true Chr4: 2022165-2028978 Arabidopsis thaliana
AT4G04200 5.0kb upstream 5.0kb upstream 5000 false Chr4: 2022165-2027164 Arabidopsis thaliana
AT4G04200 5.0kb downstream 5.0kb downstream 6814 true Chr4: 2027165-2033978 Arabidopsis thaliana
AT4G04200 5.0kb downstream 5.0kb downstream 5000 false Chr4: 2028979-2033978 Arabidopsis thaliana
AT4G04200 10.0kb upstream 10.0kb upstream 11814 true Chr4: 2017165-2028978 Arabidopsis thaliana
AT4G04200 10.0kb upstream 10.0kb upstream 10000 false Chr4: 2017165-2027164 Arabidopsis thaliana
AT4G04200 10.0kb downstream 10.0kb downstream 11814 true Chr4: 2027165-2038978 Arabidopsis thaliana
AT4G04200 10.0kb downstream 10.0kb downstream 10000 false Chr4: 2028979-2038978 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027419 5273 Angiosperm View MSA
122380357 5261 Brassicaceae View MSA
123840504 5264 Brassicales-Malvales View MSA
124342189 5266 SBM View MSA
124253201 5268 Malvidae View MSA
124061529 5270 Rosid View MSA
123748543 5271 Pentapetalae View MSA
122794037 5272 Eudicot View MSA
121346434 5274 Embryophyte View MSA
123428371 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.283       Low
cufflinks 11.476        
cufflinks 11.739       High
cufflinks 10.574        
cufflinks 10.913        
cufflinks 10.256        

0 Strain