Gene : STK A. thaliana TAIR10
Primary Identifier:  ? AT4G09960 Defline:  (1 of 1) PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11
Genomic Order:  809 Name:  ? AT4G09960
Secondary Identifier:  ? PAC:19648307
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G09960 0.5kb upstream 0.5kb upstream 5058 true Chr4: 6236375-6241432 Arabidopsis thaliana
AT4G09960 0.5kb upstream 0.5kb upstream 500 false Chr4: 6240933-6241432 Arabidopsis thaliana
AT4G09960 0.5kb downstream 0.5kb downstream 5058 true Chr4: 6235875-6240932 Arabidopsis thaliana
AT4G09960 0.5kb downstream 0.5kb downstream 500 false Chr4: 6235875-6236374 Arabidopsis thaliana
AT4G09960 1.0kb upstream 1.0kb upstream 5558 true Chr4: 6236375-6241932 Arabidopsis thaliana
AT4G09960 1.0kb upstream 1.0kb upstream 1000 false Chr4: 6240933-6241932 Arabidopsis thaliana
AT4G09960 1.0kb downstream 1.0kb downstream 5558 true Chr4: 6235375-6240932 Arabidopsis thaliana
AT4G09960 1.0kb downstream 1.0kb downstream 1000 false Chr4: 6235375-6236374 Arabidopsis thaliana
AT4G09960 2.0kb upstream 2.0kb upstream 6558 true Chr4: 6236375-6242932 Arabidopsis thaliana
AT4G09960 2.0kb upstream 2.0kb upstream 2000 false Chr4: 6240933-6242932 Arabidopsis thaliana
AT4G09960 2.0kb downstream 2.0kb downstream 6558 true Chr4: 6234375-6240932 Arabidopsis thaliana
AT4G09960 2.0kb downstream 2.0kb downstream 2000 false Chr4: 6234375-6236374 Arabidopsis thaliana
AT4G09960 5.0kb upstream 5.0kb upstream 9558 true Chr4: 6236375-6245932 Arabidopsis thaliana
AT4G09960 5.0kb upstream 5.0kb upstream 5000 false Chr4: 6240933-6245932 Arabidopsis thaliana
AT4G09960 5.0kb downstream 5.0kb downstream 9558 true Chr4: 6231375-6240932 Arabidopsis thaliana
AT4G09960 5.0kb downstream 5.0kb downstream 5000 false Chr4: 6231375-6236374 Arabidopsis thaliana
AT4G09960 10.0kb upstream 10.0kb upstream 14558 true Chr4: 6236375-6250932 Arabidopsis thaliana
AT4G09960 10.0kb upstream 10.0kb upstream 10000 false Chr4: 6240933-6250932 Arabidopsis thaliana
AT4G09960 10.0kb downstream 10.0kb downstream 14558 true Chr4: 6226375-6240932 Arabidopsis thaliana
AT4G09960 10.0kb downstream 10.0kb downstream 10000 false Chr4: 6226375-6236374 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372996 5261 Brassicaceae View MSA
123829277 5264 Brassicales-Malvales View MSA
124348180 5266 SBM View MSA
124253433 5268 Malvidae View MSA
124063483 5270 Rosid View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  
cufflinks 0.002     Low  

0 Strain