Gene : CTC1 A. thaliana TAIR10
Primary Identifier:  ? AT4G09680 Defline:  (1 of 1) PF15491 - CST, telomere maintenance, complex subunit CTC1 (CTC1_2)
Genomic Order:  781 Name:  ? AT4G09680
Secondary Identifier:  ? PAC:19647043
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G09680 0.5kb upstream 0.5kb upstream 7050 true Chr4: 6116255-6123304 Arabidopsis thaliana
AT4G09680 0.5kb upstream 0.5kb upstream 500 false Chr4: 6116255-6116754 Arabidopsis thaliana
AT4G09680 0.5kb downstream 0.5kb downstream 7050 true Chr4: 6116755-6123804 Arabidopsis thaliana
AT4G09680 0.5kb downstream 0.5kb downstream 500 false Chr4: 6123305-6123804 Arabidopsis thaliana
AT4G09680 1.0kb upstream 1.0kb upstream 7550 true Chr4: 6115755-6123304 Arabidopsis thaliana
AT4G09680 1.0kb upstream 1.0kb upstream 1000 false Chr4: 6115755-6116754 Arabidopsis thaliana
AT4G09680 1.0kb downstream 1.0kb downstream 7550 true Chr4: 6116755-6124304 Arabidopsis thaliana
AT4G09680 1.0kb downstream 1.0kb downstream 1000 false Chr4: 6123305-6124304 Arabidopsis thaliana
AT4G09680 2.0kb upstream 2.0kb upstream 8550 true Chr4: 6114755-6123304 Arabidopsis thaliana
AT4G09680 2.0kb upstream 2.0kb upstream 2000 false Chr4: 6114755-6116754 Arabidopsis thaliana
AT4G09680 2.0kb downstream 2.0kb downstream 8550 true Chr4: 6116755-6125304 Arabidopsis thaliana
AT4G09680 2.0kb downstream 2.0kb downstream 2000 false Chr4: 6123305-6125304 Arabidopsis thaliana
AT4G09680 5.0kb upstream 5.0kb upstream 11550 true Chr4: 6111755-6123304 Arabidopsis thaliana
AT4G09680 5.0kb upstream 5.0kb upstream 5000 false Chr4: 6111755-6116754 Arabidopsis thaliana
AT4G09680 5.0kb downstream 5.0kb downstream 11550 true Chr4: 6116755-6128304 Arabidopsis thaliana
AT4G09680 5.0kb downstream 5.0kb downstream 5000 false Chr4: 6123305-6128304 Arabidopsis thaliana
AT4G09680 10.0kb upstream 10.0kb upstream 16550 true Chr4: 6106755-6123304 Arabidopsis thaliana
AT4G09680 10.0kb upstream 10.0kb upstream 10000 false Chr4: 6106755-6116754 Arabidopsis thaliana
AT4G09680 10.0kb downstream 10.0kb downstream 16550 true Chr4: 6116755-6133304 Arabidopsis thaliana
AT4G09680 10.0kb downstream 10.0kb downstream 10000 false Chr4: 6123305-6133304 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363932 5261 Brassicaceae View MSA
123828484 5264 Brassicales-Malvales View MSA
124321537 5266 SBM View MSA
124247711 5268 Malvidae View MSA
124037153 5270 Rosid View MSA
123741449 5271 Pentapetalae View MSA
122790260 5272 Eudicot View MSA
122046572 5273 Angiosperm View MSA
121345821 5274 Embryophyte View MSA
123380273 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.982        
cufflinks 6.382        
cufflinks 4.492       Low
cufflinks 6.885       High
cufflinks 4.502       Low
cufflinks 5.702        

0 Strain