Gene : CRY1 A. thaliana TAIR10
Primary Identifier:  ? AT4G08920 Defline:  (1 of 1) K12118 - cryptochrome 1 (CRY1)
Genomic Order:  707 Name:  ? AT4G08920
Secondary Identifier:  ? PAC:19647949
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Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G08920 0.5kb upstream 0.5kb upstream 3651 true Chr4: 5723603-5727253 Arabidopsis thaliana
AT4G08920 0.5kb upstream 0.5kb upstream 500 false Chr4: 5723603-5724102 Arabidopsis thaliana
AT4G08920 0.5kb downstream 0.5kb downstream 3651 true Chr4: 5724103-5727753 Arabidopsis thaliana
AT4G08920 0.5kb downstream 0.5kb downstream 500 false Chr4: 5727254-5727753 Arabidopsis thaliana
AT4G08920 1.0kb upstream 1.0kb upstream 4151 true Chr4: 5723103-5727253 Arabidopsis thaliana
AT4G08920 1.0kb upstream 1.0kb upstream 1000 false Chr4: 5723103-5724102 Arabidopsis thaliana
AT4G08920 1.0kb downstream 1.0kb downstream 4151 true Chr4: 5724103-5728253 Arabidopsis thaliana
AT4G08920 1.0kb downstream 1.0kb downstream 1000 false Chr4: 5727254-5728253 Arabidopsis thaliana
AT4G08920 2.0kb upstream 2.0kb upstream 5151 true Chr4: 5722103-5727253 Arabidopsis thaliana
AT4G08920 2.0kb upstream 2.0kb upstream 2000 false Chr4: 5722103-5724102 Arabidopsis thaliana
AT4G08920 2.0kb downstream 2.0kb downstream 5151 true Chr4: 5724103-5729253 Arabidopsis thaliana
AT4G08920 2.0kb downstream 2.0kb downstream 2000 false Chr4: 5727254-5729253 Arabidopsis thaliana
AT4G08920 5.0kb upstream 5.0kb upstream 8151 true Chr4: 5719103-5727253 Arabidopsis thaliana
AT4G08920 5.0kb upstream 5.0kb upstream 5000 false Chr4: 5719103-5724102 Arabidopsis thaliana
AT4G08920 5.0kb downstream 5.0kb downstream 8151 true Chr4: 5724103-5732253 Arabidopsis thaliana
AT4G08920 5.0kb downstream 5.0kb downstream 5000 false Chr4: 5727254-5732253 Arabidopsis thaliana
AT4G08920 10.0kb upstream 10.0kb upstream 13151 true Chr4: 5714103-5727253 Arabidopsis thaliana
AT4G08920 10.0kb upstream 10.0kb upstream 10000 false Chr4: 5714103-5724102 Arabidopsis thaliana
AT4G08920 10.0kb downstream 10.0kb downstream 13151 true Chr4: 5724103-5737253 Arabidopsis thaliana
AT4G08920 10.0kb downstream 10.0kb downstream 10000 false Chr4: 5727254-5737253 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361385 5261 Brassicaceae View MSA
123835973 5264 Brassicales-Malvales View MSA
124344257 5266 SBM View MSA
124239665 5268 Malvidae View MSA
124068248 5270 Rosid View MSA
123736970 5271 Pentapetalae View MSA
122788964 5272 Eudicot View MSA
122048329 5273 Angiosperm View MSA
121343845 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 98.896     High  
cufflinks 16.855        
cufflinks 94.201     High  
cufflinks 19.229        
cufflinks 128.03     High High
cufflinks 14.705       Low

0 Strain