Gene : AT4G08540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21297//PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II // DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  670
Name:  ? AT4G08540 Secondary Identifier:  ? PAC:19645032
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G08540 0.5kb upstream 0.5kb upstream 3380 true Chr4: 5433145-5436524 Arabidopsis thaliana
AT4G08540 0.5kb upstream 0.5kb upstream 500 false Chr4: 5433145-5433644 Arabidopsis thaliana
AT4G08540 0.5kb downstream 0.5kb downstream 3380 true Chr4: 5433645-5437024 Arabidopsis thaliana
AT4G08540 0.5kb downstream 0.5kb downstream 500 false Chr4: 5436525-5437024 Arabidopsis thaliana
AT4G08540 1.0kb upstream 1.0kb upstream 3880 true Chr4: 5432645-5436524 Arabidopsis thaliana
AT4G08540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 5432645-5433644 Arabidopsis thaliana
AT4G08540 1.0kb downstream 1.0kb downstream 3880 true Chr4: 5433645-5437524 Arabidopsis thaliana
AT4G08540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 5436525-5437524 Arabidopsis thaliana
AT4G08540 2.0kb upstream 2.0kb upstream 4880 true Chr4: 5431645-5436524 Arabidopsis thaliana
AT4G08540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 5431645-5433644 Arabidopsis thaliana
AT4G08540 2.0kb downstream 2.0kb downstream 4880 true Chr4: 5433645-5438524 Arabidopsis thaliana
AT4G08540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 5436525-5438524 Arabidopsis thaliana
AT4G08540 5.0kb upstream 5.0kb upstream 7880 true Chr4: 5428645-5436524 Arabidopsis thaliana
AT4G08540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 5428645-5433644 Arabidopsis thaliana
AT4G08540 5.0kb downstream 5.0kb downstream 7880 true Chr4: 5433645-5441524 Arabidopsis thaliana
AT4G08540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 5436525-5441524 Arabidopsis thaliana
AT4G08540 10.0kb upstream 10.0kb upstream 12880 true Chr4: 5423645-5436524 Arabidopsis thaliana
AT4G08540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 5423645-5433644 Arabidopsis thaliana
AT4G08540 10.0kb downstream 10.0kb downstream 12880 true Chr4: 5433645-5446524 Arabidopsis thaliana
AT4G08540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 5436525-5446524 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
122364433 5261 Brassicaceae View MSA
123840495 5264 Brassicales-Malvales View MSA
124337178 5266 SBM View MSA
124237706 5268 Malvidae View MSA
124068509 5270 Rosid View MSA
123739960 5271 Pentapetalae View MSA
122791365 5272 Eudicot View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.019        
cufflinks 10.201        
cufflinks 11.962        
cufflinks 10.627        
cufflinks 13.266       High
cufflinks 8.1       Low

0 Strain