Gene : ORP1C A. thaliana TAIR10
Primary Identifier:  ? AT4G08180 Defline:  (1 of 3) PTHR10972//PTHR10972:SF67 - OXYSTEROL-BINDING PROTEIN-RELATED // OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D
Genomic Order:  633 Name:  ? AT4G08180
Secondary Identifier:  ? PAC:19644628
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G08180 0.5kb upstream 0.5kb upstream 4679 true Chr4: 5168984-5173662 Arabidopsis thaliana
AT4G08180 0.5kb upstream 0.5kb upstream 500 false Chr4: 5168984-5169483 Arabidopsis thaliana
AT4G08180 0.5kb downstream 0.5kb downstream 4679 true Chr4: 5169484-5174162 Arabidopsis thaliana
AT4G08180 0.5kb downstream 0.5kb downstream 500 false Chr4: 5173663-5174162 Arabidopsis thaliana
AT4G08180 1.0kb upstream 1.0kb upstream 5179 true Chr4: 5168484-5173662 Arabidopsis thaliana
AT4G08180 1.0kb upstream 1.0kb upstream 1000 false Chr4: 5168484-5169483 Arabidopsis thaliana
AT4G08180 1.0kb downstream 1.0kb downstream 5179 true Chr4: 5169484-5174662 Arabidopsis thaliana
AT4G08180 1.0kb downstream 1.0kb downstream 1000 false Chr4: 5173663-5174662 Arabidopsis thaliana
AT4G08180 2.0kb upstream 2.0kb upstream 6179 true Chr4: 5167484-5173662 Arabidopsis thaliana
AT4G08180 2.0kb upstream 2.0kb upstream 2000 false Chr4: 5167484-5169483 Arabidopsis thaliana
AT4G08180 2.0kb downstream 2.0kb downstream 6179 true Chr4: 5169484-5175662 Arabidopsis thaliana
AT4G08180 2.0kb downstream 2.0kb downstream 2000 false Chr4: 5173663-5175662 Arabidopsis thaliana
AT4G08180 5.0kb upstream 5.0kb upstream 9179 true Chr4: 5164484-5173662 Arabidopsis thaliana
AT4G08180 5.0kb upstream 5.0kb upstream 5000 false Chr4: 5164484-5169483 Arabidopsis thaliana
AT4G08180 5.0kb downstream 5.0kb downstream 9179 true Chr4: 5169484-5178662 Arabidopsis thaliana
AT4G08180 5.0kb downstream 5.0kb downstream 5000 false Chr4: 5173663-5178662 Arabidopsis thaliana
AT4G08180 10.0kb upstream 10.0kb upstream 14179 true Chr4: 5159484-5173662 Arabidopsis thaliana
AT4G08180 10.0kb upstream 10.0kb upstream 10000 false Chr4: 5159484-5169483 Arabidopsis thaliana
AT4G08180 10.0kb downstream 10.0kb downstream 14179 true Chr4: 5169484-5183662 Arabidopsis thaliana
AT4G08180 10.0kb downstream 10.0kb downstream 10000 false Chr4: 5173663-5183662 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041393 5273 Angiosperm View MSA
122363850 5261 Brassicaceae View MSA
123833730 5264 Brassicales-Malvales View MSA
124344628 5266 SBM View MSA
124239847 5268 Malvidae View MSA
124062971 5270 Rosid View MSA
123750665 5271 Pentapetalae View MSA
122795598 5272 Eudicot View MSA
121348669 5274 Embryophyte View MSA
123428535 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.661        
cufflinks 4.116        
cufflinks 2.535       Low
cufflinks 4.652        
cufflinks 2.909        
cufflinks 4.624        

0 Strain