Gene : SEC1B A. thaliana TAIR10
Primary Identifier:  ? AT4G12120 Defline:  (1 of 1) PTHR11679:SF30 - PROTEIN ROP
Genomic Order:  1043 Name:  ? AT4G12120
Secondary Identifier:  ? PAC:19648991
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12120 0.5kb upstream 0.5kb upstream 5143 true Chr4: 7256538-7261680 Arabidopsis thaliana
AT4G12120 0.5kb upstream 0.5kb upstream 500 false Chr4: 7261181-7261680 Arabidopsis thaliana
AT4G12120 0.5kb downstream 0.5kb downstream 5143 true Chr4: 7256038-7261180 Arabidopsis thaliana
AT4G12120 0.5kb downstream 0.5kb downstream 500 false Chr4: 7256038-7256537 Arabidopsis thaliana
AT4G12120 1.0kb upstream 1.0kb upstream 5643 true Chr4: 7256538-7262180 Arabidopsis thaliana
AT4G12120 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7261181-7262180 Arabidopsis thaliana
AT4G12120 1.0kb downstream 1.0kb downstream 5643 true Chr4: 7255538-7261180 Arabidopsis thaliana
AT4G12120 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7255538-7256537 Arabidopsis thaliana
AT4G12120 2.0kb upstream 2.0kb upstream 6643 true Chr4: 7256538-7263180 Arabidopsis thaliana
AT4G12120 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7261181-7263180 Arabidopsis thaliana
AT4G12120 2.0kb downstream 2.0kb downstream 6643 true Chr4: 7254538-7261180 Arabidopsis thaliana
AT4G12120 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7254538-7256537 Arabidopsis thaliana
AT4G12120 5.0kb upstream 5.0kb upstream 9643 true Chr4: 7256538-7266180 Arabidopsis thaliana
AT4G12120 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7261181-7266180 Arabidopsis thaliana
AT4G12120 5.0kb downstream 5.0kb downstream 9643 true Chr4: 7251538-7261180 Arabidopsis thaliana
AT4G12120 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7251538-7256537 Arabidopsis thaliana
AT4G12120 10.0kb upstream 10.0kb upstream 14643 true Chr4: 7256538-7271180 Arabidopsis thaliana
AT4G12120 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7261181-7271180 Arabidopsis thaliana
AT4G12120 10.0kb downstream 10.0kb downstream 14643 true Chr4: 7246538-7261180 Arabidopsis thaliana
AT4G12120 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7246538-7256537 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511526 5273 Angiosperm View MSA
122376921 5261 Brassicaceae View MSA
123801399 5264 Brassicales-Malvales View MSA
124298707 5266 SBM View MSA
124150285 5268 Malvidae View MSA
123875928 5270 Rosid View MSA
123459677 5271 Pentapetalae View MSA
122495066 5272 Eudicot View MSA
120784570 5274 Embryophyte View MSA
123426000 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.387        
cufflinks 6.993        
cufflinks 2.548       Low
cufflinks 6.094        
cufflinks 3.264        
cufflinks 7.037        

0 Strain