Gene : AT4G12290 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10638:SF39 - AMINE OXIDASE-RELATED Genomic Order:  1056
Name:  ? AT4G12290 Secondary Identifier:  ? PAC:19647386
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5751 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12290 0.5kb upstream 0.5kb upstream 3234 true Chr4: 7303905-7307138 Arabidopsis thaliana
AT4G12290 0.5kb upstream 0.5kb upstream 500 false Chr4: 7303905-7304404 Arabidopsis thaliana
AT4G12290 0.5kb downstream 0.5kb downstream 3234 true Chr4: 7304405-7307638 Arabidopsis thaliana
AT4G12290 0.5kb downstream 0.5kb downstream 500 false Chr4: 7307139-7307638 Arabidopsis thaliana
AT4G12290 1.0kb upstream 1.0kb upstream 3734 true Chr4: 7303405-7307138 Arabidopsis thaliana
AT4G12290 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7303405-7304404 Arabidopsis thaliana
AT4G12290 1.0kb downstream 1.0kb downstream 3734 true Chr4: 7304405-7308138 Arabidopsis thaliana
AT4G12290 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7307139-7308138 Arabidopsis thaliana
AT4G12290 2.0kb upstream 2.0kb upstream 4734 true Chr4: 7302405-7307138 Arabidopsis thaliana
AT4G12290 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7302405-7304404 Arabidopsis thaliana
AT4G12290 2.0kb downstream 2.0kb downstream 4734 true Chr4: 7304405-7309138 Arabidopsis thaliana
AT4G12290 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7307139-7309138 Arabidopsis thaliana
AT4G12290 5.0kb upstream 5.0kb upstream 7734 true Chr4: 7299405-7307138 Arabidopsis thaliana
AT4G12290 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7299405-7304404 Arabidopsis thaliana
AT4G12290 5.0kb downstream 5.0kb downstream 7734 true Chr4: 7304405-7312138 Arabidopsis thaliana
AT4G12290 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7307139-7312138 Arabidopsis thaliana
AT4G12290 10.0kb upstream 10.0kb upstream 12734 true Chr4: 7294405-7307138 Arabidopsis thaliana
AT4G12290 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7294405-7304404 Arabidopsis thaliana
AT4G12290 10.0kb downstream 10.0kb downstream 12734 true Chr4: 7304405-7317138 Arabidopsis thaliana
AT4G12290 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7307139-7317138 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368678 5261 Brassicaceae View MSA
123832890 5264 Brassicales-Malvales View MSA
124342730 5266 SBM View MSA
124239487 5268 Malvidae View MSA
124066432 5270 Rosid View MSA
123751770 5271 Pentapetalae View MSA
122795506 5272 Eudicot View MSA
122049910 5273 Angiosperm View MSA
123428923 5275 Viridiplantae View MSA
121349913 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.618     High  
cufflinks 3.269        
cufflinks 38.377     High  
cufflinks 16.327        
cufflinks 56.788     High  
cufflinks 0.844       Low

0 Strain