Gene : SHM4 A. thaliana TAIR10
Primary Identifier:  ? AT4G13930 Defline:  (1 of 1) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE // SUBFAMILY NOT NAMED
Genomic Order:  1233 Name:  ? AT4G13930
Secondary Identifier:  ? PAC:19646645
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-2161 Arabidopsis thaliana pathologic  
Athaliana PWY-3841 Arabidopsis thaliana pathologic  
Athaliana SER-GLYSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13930 0.5kb upstream 0.5kb upstream 2915 true Chr4: 8047692-8050606 Arabidopsis thaliana
AT4G13930 0.5kb upstream 0.5kb upstream 500 false Chr4: 8050107-8050606 Arabidopsis thaliana
AT4G13930 0.5kb downstream 0.5kb downstream 2915 true Chr4: 8047192-8050106 Arabidopsis thaliana
AT4G13930 0.5kb downstream 0.5kb downstream 500 false Chr4: 8047192-8047691 Arabidopsis thaliana
AT4G13930 1.0kb upstream 1.0kb upstream 3415 true Chr4: 8047692-8051106 Arabidopsis thaliana
AT4G13930 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8050107-8051106 Arabidopsis thaliana
AT4G13930 1.0kb downstream 1.0kb downstream 3415 true Chr4: 8046692-8050106 Arabidopsis thaliana
AT4G13930 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8046692-8047691 Arabidopsis thaliana
AT4G13930 2.0kb upstream 2.0kb upstream 4415 true Chr4: 8047692-8052106 Arabidopsis thaliana
AT4G13930 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8050107-8052106 Arabidopsis thaliana
AT4G13930 2.0kb downstream 2.0kb downstream 4415 true Chr4: 8045692-8050106 Arabidopsis thaliana
AT4G13930 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8045692-8047691 Arabidopsis thaliana
AT4G13930 5.0kb upstream 5.0kb upstream 7415 true Chr4: 8047692-8055106 Arabidopsis thaliana
AT4G13930 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8050107-8055106 Arabidopsis thaliana
AT4G13930 5.0kb downstream 5.0kb downstream 7415 true Chr4: 8042692-8050106 Arabidopsis thaliana
AT4G13930 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8042692-8047691 Arabidopsis thaliana
AT4G13930 10.0kb upstream 10.0kb upstream 12415 true Chr4: 8047692-8060106 Arabidopsis thaliana
AT4G13930 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8050107-8060106 Arabidopsis thaliana
AT4G13930 10.0kb downstream 10.0kb downstream 12415 true Chr4: 8037692-8050106 Arabidopsis thaliana
AT4G13930 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8037692-8047691 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381191 5261 Brassicaceae View MSA
123836002 5264 Brassicales-Malvales View MSA
124338448 5266 SBM View MSA
124241097 5268 Malvidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.291     High  
cufflinks 113.622     High  
cufflinks 48.316     High  
cufflinks 148.561     High  
cufflinks 35.771     High Low
cufflinks 187.628     High High

0 Strain