Gene : AT4G13780 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11946//PTHR11946:SF86 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  1219
Name:  ? AT4G13780 Secondary Identifier:  ? PAC:19648090
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13780 0.5kb upstream 0.5kb upstream 5861 true Chr4: 7993155-7999015 Arabidopsis thaliana
AT4G13780 0.5kb upstream 0.5kb upstream 500 false Chr4: 7998516-7999015 Arabidopsis thaliana
AT4G13780 0.5kb downstream 0.5kb downstream 5861 true Chr4: 7992655-7998515 Arabidopsis thaliana
AT4G13780 0.5kb downstream 0.5kb downstream 500 false Chr4: 7992655-7993154 Arabidopsis thaliana
AT4G13780 1.0kb upstream 1.0kb upstream 6361 true Chr4: 7993155-7999515 Arabidopsis thaliana
AT4G13780 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7998516-7999515 Arabidopsis thaliana
AT4G13780 1.0kb downstream 1.0kb downstream 6361 true Chr4: 7992155-7998515 Arabidopsis thaliana
AT4G13780 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7992155-7993154 Arabidopsis thaliana
AT4G13780 2.0kb upstream 2.0kb upstream 7361 true Chr4: 7993155-8000515 Arabidopsis thaliana
AT4G13780 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7998516-8000515 Arabidopsis thaliana
AT4G13780 2.0kb downstream 2.0kb downstream 7361 true Chr4: 7991155-7998515 Arabidopsis thaliana
AT4G13780 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7991155-7993154 Arabidopsis thaliana
AT4G13780 5.0kb upstream 5.0kb upstream 10361 true Chr4: 7993155-8003515 Arabidopsis thaliana
AT4G13780 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7998516-8003515 Arabidopsis thaliana
AT4G13780 5.0kb downstream 5.0kb downstream 10361 true Chr4: 7988155-7998515 Arabidopsis thaliana
AT4G13780 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7988155-7993154 Arabidopsis thaliana
AT4G13780 10.0kb upstream 10.0kb upstream 15361 true Chr4: 7993155-8008515 Arabidopsis thaliana
AT4G13780 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7998516-8008515 Arabidopsis thaliana
AT4G13780 10.0kb downstream 10.0kb downstream 15361 true Chr4: 7983155-7998515 Arabidopsis thaliana
AT4G13780 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7983155-7993154 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367230 5261 Brassicaceae View MSA
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.811        
cufflinks 25.079        
cufflinks 15.379        
cufflinks 28.509       High
cufflinks 15.851        
cufflinks 25.056        

0 Strain