Gene : IIL1 A. thaliana TAIR10
Primary Identifier:  ? AT4G13430 Defline:  (1 of 1) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC)
Genomic Order:  1183 Name:  ? AT4G13430
Secondary Identifier:  ? PAC:19648713
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana LEUSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13430 0.5kb upstream 0.5kb upstream 4439 true Chr4: 7803933-7808371 Arabidopsis thaliana
AT4G13430 0.5kb upstream 0.5kb upstream 500 false Chr4: 7807872-7808371 Arabidopsis thaliana
AT4G13430 0.5kb downstream 0.5kb downstream 4439 true Chr4: 7803433-7807871 Arabidopsis thaliana
AT4G13430 0.5kb downstream 0.5kb downstream 500 false Chr4: 7803433-7803932 Arabidopsis thaliana
AT4G13430 1.0kb upstream 1.0kb upstream 4939 true Chr4: 7803933-7808871 Arabidopsis thaliana
AT4G13430 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7807872-7808871 Arabidopsis thaliana
AT4G13430 1.0kb downstream 1.0kb downstream 4939 true Chr4: 7802933-7807871 Arabidopsis thaliana
AT4G13430 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7802933-7803932 Arabidopsis thaliana
AT4G13430 2.0kb upstream 2.0kb upstream 5939 true Chr4: 7803933-7809871 Arabidopsis thaliana
AT4G13430 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7807872-7809871 Arabidopsis thaliana
AT4G13430 2.0kb downstream 2.0kb downstream 5939 true Chr4: 7801933-7807871 Arabidopsis thaliana
AT4G13430 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7801933-7803932 Arabidopsis thaliana
AT4G13430 5.0kb upstream 5.0kb upstream 8939 true Chr4: 7803933-7812871 Arabidopsis thaliana
AT4G13430 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7807872-7812871 Arabidopsis thaliana
AT4G13430 5.0kb downstream 5.0kb downstream 8939 true Chr4: 7798933-7807871 Arabidopsis thaliana
AT4G13430 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7798933-7803932 Arabidopsis thaliana
AT4G13430 10.0kb upstream 10.0kb upstream 13939 true Chr4: 7803933-7817871 Arabidopsis thaliana
AT4G13430 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7807872-7817871 Arabidopsis thaliana
AT4G13430 10.0kb downstream 10.0kb downstream 13939 true Chr4: 7793933-7807871 Arabidopsis thaliana
AT4G13430 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7793933-7803932 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376626 5261 Brassicaceae View MSA
123838353 5264 Brassicales-Malvales View MSA
124346473 5266 SBM View MSA
124238803 5268 Malvidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 75.46     High  
cufflinks 50.653     High Low
cufflinks 86.867     High  
cufflinks 67.753     High  
cufflinks 88.032     High High
cufflinks 57.672     High  

0 Strain