Gene : AT4G13340 A. thaliana TAIR10
Defline:  (1 of 3) PTHR32093:SF23 - LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED Genomic Order:  1172
Name:  ? AT4G13340 Secondary Identifier:  ? PAC:19646275
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13340 0.5kb upstream 0.5kb upstream 2948 true Chr4: 7758110-7761057 Arabidopsis thaliana
AT4G13340 0.5kb upstream 0.5kb upstream 500 false Chr4: 7758110-7758609 Arabidopsis thaliana
AT4G13340 0.5kb downstream 0.5kb downstream 2948 true Chr4: 7758610-7761557 Arabidopsis thaliana
AT4G13340 0.5kb downstream 0.5kb downstream 500 false Chr4: 7761058-7761557 Arabidopsis thaliana
AT4G13340 1.0kb upstream 1.0kb upstream 3448 true Chr4: 7757610-7761057 Arabidopsis thaliana
AT4G13340 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7757610-7758609 Arabidopsis thaliana
AT4G13340 1.0kb downstream 1.0kb downstream 3448 true Chr4: 7758610-7762057 Arabidopsis thaliana
AT4G13340 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7761058-7762057 Arabidopsis thaliana
AT4G13340 2.0kb upstream 2.0kb upstream 4448 true Chr4: 7756610-7761057 Arabidopsis thaliana
AT4G13340 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7756610-7758609 Arabidopsis thaliana
AT4G13340 2.0kb downstream 2.0kb downstream 4448 true Chr4: 7758610-7763057 Arabidopsis thaliana
AT4G13340 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7761058-7763057 Arabidopsis thaliana
AT4G13340 5.0kb upstream 5.0kb upstream 7448 true Chr4: 7753610-7761057 Arabidopsis thaliana
AT4G13340 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7753610-7758609 Arabidopsis thaliana
AT4G13340 5.0kb downstream 5.0kb downstream 7448 true Chr4: 7758610-7766057 Arabidopsis thaliana
AT4G13340 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7761058-7766057 Arabidopsis thaliana
AT4G13340 10.0kb upstream 10.0kb upstream 12448 true Chr4: 7748610-7761057 Arabidopsis thaliana
AT4G13340 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7748610-7758609 Arabidopsis thaliana
AT4G13340 10.0kb downstream 10.0kb downstream 12448 true Chr4: 7758610-7771057 Arabidopsis thaliana
AT4G13340 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7761058-7771057 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381707 5261 Brassicaceae View MSA
123841495 5264 Brassicales-Malvales View MSA
124351661 5266 SBM View MSA
124254554 5268 Malvidae View MSA
124074520 5270 Rosid View MSA
123751287 5271 Pentapetalae View MSA
122794768 5272 Eudicot View MSA
122048760 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121349764 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 160.497     High High
cufflinks 62.54     High  
cufflinks 104.791     High  
cufflinks 53.157     High Low
cufflinks 100.339     High  
cufflinks 89.7     High  

0 Strain