Gene : AT4G13170 A. thaliana TAIR10

Defline:  (1 of 4) K02872 - large subunit ribosomal protein L13Ae (RP-L13Ae, RPL13A) Genomic Order:  1150
Name:  ? AT4G13170 Secondary Identifier:  ? PAC:19648620

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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13170 0.5kb upstream 0.5kb upstream 2151 true Chr4: 7654944-7657094 Arabidopsis thaliana
AT4G13170 0.5kb upstream 0.5kb upstream 500 false Chr4: 7656595-7657094 Arabidopsis thaliana
AT4G13170 0.5kb downstream 0.5kb downstream 2151 true Chr4: 7654444-7656594 Arabidopsis thaliana
AT4G13170 0.5kb downstream 0.5kb downstream 500 false Chr4: 7654444-7654943 Arabidopsis thaliana
AT4G13170 1.0kb upstream 1.0kb upstream 2651 true Chr4: 7654944-7657594 Arabidopsis thaliana
AT4G13170 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7656595-7657594 Arabidopsis thaliana
AT4G13170 1.0kb downstream 1.0kb downstream 2651 true Chr4: 7653944-7656594 Arabidopsis thaliana
AT4G13170 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7653944-7654943 Arabidopsis thaliana
AT4G13170 2.0kb upstream 2.0kb upstream 3651 true Chr4: 7654944-7658594 Arabidopsis thaliana
AT4G13170 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7656595-7658594 Arabidopsis thaliana
AT4G13170 2.0kb downstream 2.0kb downstream 3651 true Chr4: 7652944-7656594 Arabidopsis thaliana
AT4G13170 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7652944-7654943 Arabidopsis thaliana
AT4G13170 5.0kb upstream 5.0kb upstream 6651 true Chr4: 7654944-7661594 Arabidopsis thaliana
AT4G13170 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7656595-7661594 Arabidopsis thaliana
AT4G13170 5.0kb downstream 5.0kb downstream 6651 true Chr4: 7649944-7656594 Arabidopsis thaliana
AT4G13170 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7649944-7654943 Arabidopsis thaliana
AT4G13170 10.0kb upstream 10.0kb upstream 11651 true Chr4: 7654944-7666594 Arabidopsis thaliana
AT4G13170 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7656595-7666594 Arabidopsis thaliana
AT4G13170 10.0kb downstream 10.0kb downstream 11651 true Chr4: 7644944-7656594 Arabidopsis thaliana
AT4G13170 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7644944-7654943 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379928 5261 Brassicaceae View MSA
123830713 5264 Brassicales-Malvales View MSA
124348862 5266 SBM View MSA
124247090 5268 Malvidae View MSA
124069577 5270 Rosid View MSA
123745483 5271 Pentapetalae View MSA
122796740 5272 Eudicot View MSA
122042126 5273 Angiosperm View MSA
121343862 5274 Embryophyte View MSA
123428218 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.72        
cufflinks 21.297        
cufflinks 18.42        
cufflinks 22.859        
cufflinks 15.671       Low
cufflinks 25.802       High

0 Strain