Gene : AT4G12980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23130//PTHR23130:SF95 - FAMILY NOT NAMED // AUXIN-RESPONSIVE PROTEIN-RELATED Genomic Order:  1131
Name:  ? AT4G12980 Secondary Identifier:  ? PAC:19646152
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12980 0.5kb upstream 0.5kb upstream 2208 true Chr4: 7589395-7591602 Arabidopsis thaliana
AT4G12980 0.5kb upstream 0.5kb upstream 500 false Chr4: 7591103-7591602 Arabidopsis thaliana
AT4G12980 0.5kb downstream 0.5kb downstream 2208 true Chr4: 7588895-7591102 Arabidopsis thaliana
AT4G12980 0.5kb downstream 0.5kb downstream 500 false Chr4: 7588895-7589394 Arabidopsis thaliana
AT4G12980 1.0kb upstream 1.0kb upstream 2708 true Chr4: 7589395-7592102 Arabidopsis thaliana
AT4G12980 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7591103-7592102 Arabidopsis thaliana
AT4G12980 1.0kb downstream 1.0kb downstream 2708 true Chr4: 7588395-7591102 Arabidopsis thaliana
AT4G12980 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7588395-7589394 Arabidopsis thaliana
AT4G12980 2.0kb upstream 2.0kb upstream 3708 true Chr4: 7589395-7593102 Arabidopsis thaliana
AT4G12980 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7591103-7593102 Arabidopsis thaliana
AT4G12980 2.0kb downstream 2.0kb downstream 3708 true Chr4: 7587395-7591102 Arabidopsis thaliana
AT4G12980 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7587395-7589394 Arabidopsis thaliana
AT4G12980 5.0kb upstream 5.0kb upstream 6708 true Chr4: 7589395-7596102 Arabidopsis thaliana
AT4G12980 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7591103-7596102 Arabidopsis thaliana
AT4G12980 5.0kb downstream 5.0kb downstream 6708 true Chr4: 7584395-7591102 Arabidopsis thaliana
AT4G12980 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7584395-7589394 Arabidopsis thaliana
AT4G12980 10.0kb upstream 10.0kb upstream 11708 true Chr4: 7589395-7601102 Arabidopsis thaliana
AT4G12980 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7591103-7601102 Arabidopsis thaliana
AT4G12980 10.0kb downstream 10.0kb downstream 11708 true Chr4: 7579395-7591102 Arabidopsis thaliana
AT4G12980 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7579395-7589394 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364734 5261 Brassicaceae View MSA
123838754 5264 Brassicales-Malvales View MSA
124336764 5266 SBM View MSA
124253692 5268 Malvidae View MSA
124072358 5270 Rosid View MSA
123745373 5271 Pentapetalae View MSA
122787845 5272 Eudicot View MSA
122050744 5273 Angiosperm View MSA
121348347 5274 Embryophyte View MSA
123428624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.44       Low
cufflinks 16.504        
cufflinks 14.745        
cufflinks 17.535        
cufflinks 16.942        
cufflinks 19.389        

0 Strain